Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1960 ATGTCATCTCTCAGCAGGGAGTTGGTGTTCTTAATCCTTCAGTTTCTGGATGAGGAAAAGTTCAAAGAAACTGTTCACAAACTGGAGCAGGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGTAATTGGGATGAGGTTGAGAGGTACCTCTCTGGTTTCACCAAAGTAGATGACAATAGGTATTCAATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTACTTGGAGGCATTAGATAAGCATGATCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTCTTTGCCACATTTAATGAAGAACTATTTAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAGCAGTTGTCCAAGTATGGTGATACGAAGTCTGCAAGGGCAATCATGCTGGTTGAGCTCAAAAAGTTGATTGAGGCTAATCCTTTATTTCGCGATAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGTAAGAACCCCCGGCCAAATCCTGATATAAAAACACTTTTCGTGGATCACTCATGTGGACAACCTAATGGTGCACGGGCTCCATCCCCTGCTAGCAATCCACTACTAGGATCATTACCGAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCGGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCAACAACTGTGGCACATCCTGCAGTCTCTGGTGGAGCTATAGGTCTTGGTGCACCGTCAATCCCGGATCATGTTTCTAAGAGAACAAGACCAATGGGAATATCAGATGAGGTAAATCTGCCAGTCAATGTTCTGTCAGCTACATTCCCTGGTCATGGTCATGGTCAGGCTTTTAATGCACCTGACGACTTGCCAAAGACTGTCATGCGAACTCTGAACCAAGGCTCATCTCCTATGAGCATGGATTTTCATCCAGTTCAACAGACACTGCTCCTTGTTGGCACGAATGTGGGGGACATTGCTTTGTGGGAAGTGGGCTCTAGGGAGCGGTTGCTCATGAGGAACTTTAAAGTGTGGGATCTTAGTGCTTGTTCAATGCCCTTTCAGGCTGCTCTTGTCAAAGATCCAGGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGGGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGCGGGGATGAAGTCCGACAGCATTTGGAGATTGATGCTCATGTCGGTGGAGTTAATGATTTAGCATTTTCACACCCGAATAAGCAGTTATGTGTCATTACCTGTGGTGATGATAAGACCATTAAGGTTTGGGATGCTGCTTCTGGAGCAAAACAGTATACCTTTGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGTCCACATTATAAAGAAAACATTCAGTTCATCTTTTCCACGGCATTAGATGGAAAGATAAAAGCATGGTTGTATGATAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGTACAACCATGGCCTACAGTGCTGATGGTACAAGACTTTTTTCATGTGGGACGAGTAAGGAGGGGGAATCCTCTATAGTTGAGTGGAATGAAAGTGAAGGAGCGGTGAAAAGGACTTATCAAGGATTTCGGAAACGATCTTTGGGTGTTGTACAATTTGACACAACCAAAAATCGATATTTGGCTGCAGGTGATGATTTCTCCATTAAATTTTGGGACATGGACAATATTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGAATCCGTTTTAATAAGGATGGAGCTCTTTTAGCGGTTTCTGCAAATGACAATGGAATCAAAATCTTAGCCAATGCAGATGGTATTCGTGTGTTACGTACACTAGAAAATTCTTTGTACGATACATCTAGAACGTCAGAAGCCATGACAAAGCCTGCAATAAATCCAATTTCAGCTGCTGCCGCTGCTGCAGCAACCAGTGCTGCACTTGCAGAGAGGGCCTCATCTGTTGTAGCTATTACTGCAATGAATGGAGATGCTCGAAACTTGGGTGATGTTAAACCTAGAATTAGTGAAGAATCCAATGATAAATCAAAGATATGGAAGCTCACTGAAATCAGTGAACCATCTCAATGTAGATCCTTGAAGCTACCCGAGAATGTTAGAGTGAACAAGATATCAAGGTTGATATATACTAATTCAGGCAATGCTATTCTAGCATTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAGTGATCGAAATTCAACTGGCAAGGCCACTGCCAATGTGCAGCCACAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAATGACATTACTGATAGCAATACTGAGGATGCCGTTCCCTGCTTTGCTCTGTCAAAAAATGATTCTTATGTAATGTCAGCATCAGGAGGGAAGATTTCTCTGTTCAATATGATGACTTTTAAGACAATGACAACATTCATGCCTCCACCACCTGCAGCAACTTTTCTTGCTTTCCATCCTCAGGATAATAATATTATTGCGATAGGCATGGATGATTCTACCATTCAAATATATAATGTCCGTGTGGATGAGGTTAAAAGTAAACTCAAAGGTCATACTAAAAGAATAACTGGTCTTGCTTTTTCTCATGTATTGAATGTGCTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAAACAGAAATCTAGATTCTTGCAACTTCCTGCCGGGAGGACTCCACCAGCTCAGGCAGATACCCGTGTACAGTTTAATCAGGATCAGATCCGCTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAATGTTTAAAGCAGTGGTTCCCACGAGAATCAGCGGCCCCAGTATCACATGCAACCTTCTCATGTGATAGCCAGCTCATATATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTTAGTGCTTCAAACCTTAGATTACGTTGTCGAATCAATCCTTCTGCTTATCTTTCGGCCAGTGTCAGTTCTAATGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAATCAGTTTGCTGTAGGATTGTCAGATGGCGGAGTTCATGTCTTTGAGCCCCTTGAGTCTGAAGGCAAATGGGGTGTGCCGCCACCCAATGAGAATGGGTCAACGAGCAATATGGCAGCTACTTCAGTTGGAGCTTCTTCGGATGAAGCTCAGAGATGA 3336 0.4305 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPASNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPDHVSKRTRPMGISDEVNLPVNVLSATFPGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLAVSANDNGIKILANADGIRVLRTLENSLYDTSRTSEAMTKPAINPISAAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEISEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSTGKATANVQPQLWQPSSGILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQLCVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFNQDQIRFLVVHETQLAIYEATKLECLKQWFPRESAAPVSHATFSCDSQLIYASFLDATVCVFSASNLRLRCRINPSAYLSASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSTSNMAATSVGASSDEAQR* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1960 1111 PANTHER TOPLESS-LIKE PROTEIN 1 1111 - -
Vra5g1960 1111 ProSitePatterns Trp-Asp (WD) repeats signature. 455 469 IPR019775 -
Vra5g1960 1111 Gene3D - 495 784 IPR015943 GO:0005515
Vra5g1960 1111 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 899 1098 - -
Vra5g1960 1111 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 898 930 - -
Vra5g1960 1111 SMART Lish 4 36 IPR006594 GO:0005515
Vra5g1960 1111 MobiDBLite consensus disorder prediction 1088 1111 - -
Vra5g1960 1111 Pfam WD domain, G-beta repeat 897 930 IPR001680 GO:0005515
Vra5g1960 1111 Pfam WD domain, G-beta repeat 434 468 IPR001680 GO:0005515
Vra5g1960 1111 MobiDBLite consensus disorder prediction 1078 1111 - -
Vra5g1960 1111 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1111 IPR027728 GO:0006355
Vra5g1960 1111 Gene3D - 813 1083 IPR015943 GO:0005515
Vra5g1960 1111 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vra5g1960 1111 SMART ctlh 34 92 IPR006595 -
Vra5g1960 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 898 939 IPR001680 GO:0005515
Vra5g1960 1111 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 322 547 IPR011047 -
Vra5g1960 1111 SMART WD40_4 561 601 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 515 558 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 382 421 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 471 512 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 321 360 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 848 888 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 982 1023 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 427 468 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 1036 1075 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 808 845 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 891 930 IPR001680 GO:0005515
Vra5g1960 1111 SMART WD40_4 604 645 IPR001680 GO:0005515
Vra5g1960 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 434 477 IPR001680 GO:0005515
Vra5g1960 1111 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vra5g1960 1111 Gene3D - 307 494 IPR015943 GO:0005515
Vra5g1960 1111 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 477 935 IPR011047 -
Vra5g1960 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 610 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1960 Vra-Chr5 25298598 25309620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1960 432 629 Miscellaneous Gene Families AT5G08390 23.645 1.51e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1960 - - gmx:100790282 2137.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0003 9 17979 25757 Vra5g1960 5 25298598 25309620 ECH
Vra5g1960 5 25298598 25309620 Vra5g1960 5 25298598 25309620 ECH
Vra9g0003 9 17979 25757 Vra5g1960 5 25298598 25309620 PCT