Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2734 ATGGCCTCTCACCCAAACCAAACAGGAACGGGAGCTGACGGGCAAGGAGAAAAGGACCCCCCATCGCCGATCCCAGCATCAGCCTCTCAGAACCCACTTTCTGAGATATCGCCGTCACCGTCGCCGTCGCCGTCCTCATCGACGGCGCCGGCGCTGGTGCTTTCGAACTCGGGGAAGCGCATCGACCAGACGGGGAGGAAGAAATACGTGAAGCAAGTGACTGGGCGGCATAACGACACGGAGCTGCACCTGGCGGCACAGAGGGGCGACGTCGGCGCCGTGAGACAGATCCTTCTCGACGTCGAATCTCAGGTTATGGGAACTCTCGGCGACGGCGACGACGACGATCTCGACACCGAGATTGCGGAGGTTCGAGCTTGCCTCGTCAACGAAGAGAACGAGCTCGGTGAGACCCCTTTGTTCACTGCCGCTGAAAAGGGTCATCTCCATGTCGTGAAGGAGCTTCTCAACCATTCCACTGCTCAGACTGTTTCCAAAAAGAACCGATCGGGATTTGATCCCTTGCATATTGCAGCTAGTAAAGGCCACCACTCCATTGTTCAGGTTTTGCTAGATTATGACCCGGGATTGAGCAAAACTATTGGTCCATCCAATTCGACTCCACTTATAACTGCAGCGACAAGAGGACACACGGAAGTGGTGAATGAGCTGCTGTCGAAGGATTGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAATGCTTTGCATTTAGCAGCTCGTCAGGGCCATGTGGAGATTGTGAAAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGAAGGACTGACAAGAAAGGGCAAACTGCACTGCACATGGCTGTAAAAGGGCAGAGTTGTGACGCAGTAAAGTTACTTCTTGATGCGGATGCTGCCATTGTTATGCTTCCTGACAAATTTGGTAACACAGCATTACATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTATTACATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCTCTTGACATCGCTGAAAGCCTTCCACTCTGTGAAGAGGCATCAGATATAAAAGAATGTCTTTCTCGATATGGAGCACTTAGAGCTAACGAGCTTAACCAACCAAGGGATGAACTGAGGAAAACTGTTACTCAAATCAAGAAAGATGTTCACACCCAACTTGAACAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAAGAGTTGAGGAAGCTCCATAGGGAAGGAATCAACAATGCCACAAACTCAGTAACAGTGGTGGCGGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACTGTGCCCGGTGGTGATAAGGATGATGGCTCAGCAGTGGTAGCAGCTTATGCTGCTTTTAAAATCTTCTTCATCTTTAATGCTATTGCACTTTTTACATCTTTGGCCGTTGTGGTTGTTCAAATCACCTTGGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTGGAGGTAATCAACAAGCTCATGTGGCTGGCTTCTGTTTGCACTTCAGTGGCATTTATTGCTTCTTCTTACATAGTTGTGGGTAGGAAGAATAAGTGGGCTGCTATTCTTGTTACATTAGTTGGAGGGGTGATAATTTCTGGAGTTATTGGCACCATGACTTTCTATGTAGTGAGATCTAAGAGAAGCAGGTCAATGAGGAAGAAGGAGAAGCAGCTAGCCAGGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCCAACTCTGAGGTTGATCGGATTTATGCTATTTGA 1797 0.4769 MASHPNQTGTGADGQGEKDPPSPIPASASQNPLSEISPSPSPSPSSSTAPALVLSNSGKRIDQTGRKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVESQVMGTLGDGDDDDLDTEIAEVRACLVNEENELGETPLFTAAEKGHLHVVKELLNHSTAQTVSKKNRSGFDPLHIAASKGHHSIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDAVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAESLPLCEEASDIKECLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDKDDGSAVVAAYAAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRKNKWAAILVTLVGGVIISGVIGTMTFYVVRSKRSRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAI* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2734 598 ProSiteProfiles Ankyrin repeat region circular profile. 272 299 - -
Vra8g2734 598 ProSiteProfiles Ankyrin repeat profile. 135 167 IPR002110 GO:0005515
Vra8g2734 598 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Vra8g2734 598 Gene3D - 56 195 IPR036770 -
Vra8g2734 598 ProSiteProfiles Ankyrin repeat region circular profile. 135 159 - -
Vra8g2734 598 Pfam Ankyrin repeats (3 copies) 270 335 IPR002110 GO:0005515
Vra8g2734 598 Pfam Ankyrin repeats (3 copies) 204 263 IPR002110 GO:0005515
Vra8g2734 598 Pfam Ankyrin repeats (3 copies) 82 196 IPR002110 GO:0005515
Vra8g2734 598 ProSiteProfiles Ankyrin repeat profile. 170 192 IPR002110 GO:0005515
Vra8g2734 598 ProSiteProfiles Ankyrin repeat region circular profile. 238 261 - -
Vra8g2734 598 PANTHER CASKIN 41 593 - -
Vra8g2734 598 Pfam Domain of unknown function 420 526 IPR026961 -
Vra8g2734 598 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 41 593 - -
Vra8g2734 598 SMART ANK_2a 77 106 IPR002110 GO:0005515
Vra8g2734 598 SMART ANK_2a 204 233 IPR002110 GO:0005515
Vra8g2734 598 SMART ANK_2a 306 336 IPR002110 GO:0005515
Vra8g2734 598 SMART ANK_2a 272 301 IPR002110 GO:0005515
Vra8g2734 598 SMART ANK_2a 238 267 IPR002110 GO:0005515
Vra8g2734 598 SMART ANK_2a 135 164 IPR002110 GO:0005515
Vra8g2734 598 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vra8g2734 598 ProSiteProfiles Ankyrin repeat profile. 272 304 IPR002110 GO:0005515
Vra8g2734 598 SUPERFAMILY Ankyrin repeat 82 352 IPR036770 -
Vra8g2734 598 Gene3D - 198 403 IPR036770 -
Vra8g2734 598 MobiDBLite consensus disorder prediction 1 66 - -
Vra8g2734 598 ProSiteProfiles Ankyrin repeat region circular profile. 170 192 - -
Vra8g2734 598 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2734 Vra-Chr8 45004413 45008241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2734 24 598 Miscellaneous Gene Families AT3G12360 79.340 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2734 - - pvu:PHAVU_007G008900g 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2734 8 45004413 45008241 Vra3g0360 3 4320363 4323919 ECH
Vra8g2734 8 45004413 45008241 Vra8g2734 8 45004413 45008241 ECH