Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0360 ATGAAGAGACAATTGACAGGTATACGGGGTGATTCTCCCCTGCAATCTGCAATACGAGCTGGGAATTTAGAATTGGTTCGGGAAATCATCTCTCAGAGTCCCGAGGGAGAATTAAAGGAGCTTCTTTCAAAGAGAAACAACTCGTGTGAAACTGCCTTATATGTTGCAGCTGATAATGGTCATCTTGATATAGTGAAGGAATTGATTAGATACCATGATGGTGGGTTGGCCGGCTTCAAAGCTCGAAATGGATTCGATGCATTCCACATCGCTGCTAAGAATGGAAACTTGGAGATATTGAAGGTCCTCATGGAGTTTATTCCTGAAATTTCAATGACTGTTGATCTGACAAACACCACTGCGTTGCATACTGCTGCAGCACAAGGACATATTGAGGTAGTAAATTTTCTCTTGGAAAATGGTAGCAGCTTGGTAACTATTGCGAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGTCATGTGGAGGTAGTCAAGGCCATTCTGACGAAGGAACCTGAAATTGCAGTGAGAATGGATAAGAAGGGGCAGACAGCGCTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTTGATGAGCTTGTGAAACTGAATTCATCTTTGGCTAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATAGCAACCAGGAAGGGTCGTCTACAGGTTGTTCAGAAGCTACTAGATTGCAAAGAAATAGACACAGATGTTATAAACAAATCTGGAGAAACTGCCTTGGATGCTGCAGAGAAAAATGGTCGGTTGGAAATCTCGAACTTTCTGCAACACCGGGGAGCGCAAAGTGCCAAGTCCATCAAGTCACCCAATACAAACACTGCCCTTGAGCTGAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACTTTCAAAACACAGAGACGTATGAGAGGTATAGCGAAGCGAATTAACAAAATGCACACTGAGGGGCTTAACAATGCCATCAACTACAACACTATTGTTGCTGTCCTAATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCCGAGCAACAAGATGAACTCTCTCCTGGGATGTCTCCTGGGGAAGTACACATTGCTCCTGATATTGGATTCAAGATATTCATAATCTTTGATTCAACTGCCCTCTTCATATCACTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAACAAGTTGATGTGGGTGGCTTGTGTGCTAATTTCTGTGGCGTTTATTGCAATGTCATTCATAATTGTTGGAGATCATAAAGAGTTGGCTATAGCAGCCACAGCTTTAGGGACAGTGATTATGGCAGCAACTTTAGGAACACTCTGTTATTGGGTGATTGCTCACCGCCTTGAGGCCTCAAGATTGCGAAGTCTTCGAACAACAATGAGCAGTAGGCAGTCAATGTCTTTGTCAATGATGTCAGGATCGGAGAATGAGTACAAGACAGTGTACGCCATATAA 1563 0.4319 MKRQLTGIRGDSPLQSAIRAGNLELVREIISQSPEGELKELLSKRNNSCETALYVAADNGHLDIVKELIRYHDGGLAGFKARNGFDAFHIAAKNGNLEILKVLMEFIPEISMTVDLTNTTALHTAAAQGHIEVVNFLLENGSSLVTIAKSNGKTVLHSAARNGHVEVVKAILTKEPEIAVRMDKKGQTALHMAVKGQNLELVDELVKLNSSLANMVDAKGNTALHIATRKGRLQVVQKLLDCKEIDTDVINKSGETALDAAEKNGRLEISNFLQHRGAQSAKSIKSPNTNTALELKRTVSDIKSGVHNQLEHTFKTQRRMRGIAKRINKMHTEGLNNAINYNTIVAVLIATVAFAAIFNVPGQYPEQQDELSPGMSPGEVHIAPDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSFIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSMSLSMMSGSENEYKTVYAI* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0360 520 ProSiteProfiles Ankyrin repeat region circular profile. 185 212 - -
Vra3g0360 520 ProSiteProfiles Ankyrin repeat region circular profile. 117 144 - -
Vra3g0360 520 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Vra3g0360 520 Pfam Ankyrin repeats (3 copies) 81 144 IPR002110 GO:0005515
Vra3g0360 520 Pfam Ankyrin repeats (3 copies) 9 71 IPR002110 GO:0005515
Vra3g0360 520 Pfam Ankyrin repeats (3 copies) 216 278 IPR002110 GO:0005515
Vra3g0360 520 Pfam Ankyrin repeats (3 copies) 151 209 IPR002110 GO:0005515
Vra3g0360 520 SMART ANK_2a 83 112 IPR002110 GO:0005515
Vra3g0360 520 SMART ANK_2a 253 282 IPR002110 GO:0005515
Vra3g0360 520 SMART ANK_2a 219 249 IPR002110 GO:0005515
Vra3g0360 520 SMART ANK_2a 48 78 IPR002110 GO:0005515
Vra3g0360 520 SMART ANK_2a 185 214 IPR002110 GO:0005515
Vra3g0360 520 SMART ANK_2a 151 180 IPR002110 GO:0005515
Vra3g0360 520 SMART ANK_2a 9 40 IPR002110 GO:0005515
Vra3g0360 520 SMART ANK_2a 117 147 IPR002110 GO:0005515
Vra3g0360 520 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
Vra3g0360 520 ProSiteProfiles Ankyrin repeat profile. 83 105 IPR002110 GO:0005515
Vra3g0360 520 ProSiteProfiles Ankyrin repeat region circular profile. 219 241 - -
Vra3g0360 520 SUPERFAMILY Ankyrin repeat 13 278 IPR036770 -
Vra3g0360 520 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 520 - -
Vra3g0360 520 Pfam Domain of unknown function 333 448 IPR026961 -
Vra3g0360 520 Gene3D - 4 110 IPR036770 -
Vra3g0360 520 ProSiteProfiles Ankyrin repeat profile. 219 241 IPR002110 GO:0005515
Vra3g0360 520 ProSiteProfiles Ankyrin repeat profile. 185 217 IPR002110 GO:0005515
Vra3g0360 520 Gene3D - 178 278 IPR036770 -
Vra3g0360 520 Gene3D - 111 177 IPR036770 -
Vra3g0360 520 ProSiteProfiles Ankyrin repeat region circular profile. 83 105 - -
Vra3g0360 520 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 520 - -
Vra3g0360 520 ProSiteProfiles Ankyrin repeat region circular profile. 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0360 Vra-Chr3 4320363 4323919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0360 1 520 Miscellaneous Gene Families AT1G07710 62.928 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0360 - - gmx:100787392 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2734 8 45004413 45008241 Vra3g0360 3 4320363 4323919 ECH
Vra3g0360 3 4320363 4323919 Vra3g0360 3 4320363 4323919 ECH