Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2393 ATGAAGCTTCGGAGATCTTCGTTCTACATCTTTCTAGGGTTTCTGGTGCTTTTCCTTTCGGCGCCGTCAATGGCTAAATTCGTGGTGGAGAAGAACAGTTTGACGGTGACGTCACCGGACAACATCAAGGGAACGCACGATAGCGCGATTGGGAACTTTGGGATACCTCAATACGGAGGCAGCATGGCTGGGAACGTGGTGTATCCTAAGGACAATAAAAAGGGTTGCAAGGAGTTTGATGAGTTTGGGATTTCCTTCAAATCTAAACCCGGTGCTCTTCCCACTATCGTTTTGCTCGATCGAGGAAATTGCTTCTTTGCTTTGAAGGTCTGGAATGCACAAAAGGCTGGAGCTTCTGCTGTTCTTGTTGCAGATGACATTGAGGAAAAGTTGATCACCATGGACACTCCTGAAGAAGATGGGTCCTCTGCAAAATACATAGAGAACATAACAATACCATCTGCCCTCATTGAAAAAAGTTTTGGTGGAAAGTTAAAGGATGCCATAAGTAATGGGGATATGGTCAATGTAAATCTGGATTGGAGAGAGGCTGTCCCCCACCCAGATGATCGTGTGGAGTATGAACTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGACATGTTGATGGAATTTGTGAAAGATTTTAAGGGTGCGGCACAGATATTAGAGAAAGGTGGTTATTCTCAATTTACGCCCCATTATATAACTTGGTACTGTCCTCAGGCATTCACATTGAGCAAACAGTGCAAGTCCCAGTGCATAAATCATGGGAGATATTGTGCTCCAGATCCTGAGCAGGATTTCAGTACTGGATATGACGGAAAGGATGTGGTTATTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTAGCTAATGAAACCAAAAAGCCTTGGGTGTGGTGGGATTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAATACAACAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGCCTTGATCTTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATAGTGATTCTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAGGTTGGGAAGGGATCACGAGGTGACGTTACCATATTGCCTACCCTAGTTGTCAACAATAGACAGTATCGAGGGAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTGCTGGTTTCGAAGAAACTACTGAACCTGCTATTTGTTTGAGCAGTGATGTGGAGACAAATGAGTGCTTGGAGAATAATGGTGGTTGTTGGCAGGATAAATCAGCTAACATCACCGCATGCAAGGATACTTTCCGTGGGAGAGTATGTGAATGCCCCTTGGTGGATGGTGTGCAGTTCAAAGGAGATGGTTATACAACATGTGCAGCTAGTGGACCTGGGCGGTGCAAGATAAACAACGGAGGTTGTTGGCATGAAGCTCGGAATGGGCATGCATATTCTGCCTGTTTGGATGATGGAGGGGTAAAATGCAAGTGTCCTGCAGGCTTTAAAGGTGATGGTGTCAAAAATTGTGAAGACATTGATGAATGCAGAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATGAGTGCACTTGCAGTGGAGATCTTTTGTATATAAAGGACCACGATACTTGCATAAGTAAAACTGCCCGTCAGGAGGGAAGATCAGCTTGGACTGTTTTTTGGGTTATTTTAGTTGGCTTAGTTATGGCTGCTGCTGGGGCATACCTCCTGTACAAATATAGAATAAGGTCTTATATGGATTCTGAGATCAGAGCCATCATGGCACAGTATATGCCCTTGGACAGCCAATCAGAGGTTGTAAATCATGCCAACGATGAAAGAGCGTGA 1893 0.4379 MKLRRSSFYIFLGFLVLFLSAPSMAKFVVEKNSLTVTSPDNIKGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDEFGISFKSKPGALPTIVLLDRGNCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGGKLKDAISNGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYSQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDLKKIERCMGDPNSDSENPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICAGFEETTEPAICLSSDVETNECLENNGGCWQDKSANITACKDTFRGRVCECPLVDGVQFKGDGYTTCAASGPGRCKINNGGCWHEARNGHAYSACLDDGGVKCKCPAGFKGDGVKNCEDIDECREKKACQCPECSCKNTWGSYECTCSGDLLYIKDHDTCISKTARQEGRSAWTVFWVILVGLVMAAAGAYLLYKYRIRSYMDSEIRAIMAQYMPLDSQSEVVNHANDERA* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2393 630 MobiDBLite consensus disorder prediction 346 365 - -
Vra8g2393 630 Gene3D Laminin 411 467 - -
Vra8g2393 630 SMART egfca_6 518 560 IPR001881 GO:0005509
Vra8g2393 630 Gene3D - 24 188 - -
Vra8g2393 630 ProSitePatterns EGF-like domain signature 2. 502 516 IPR000742 -
Vra8g2393 630 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Vra8g2393 630 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 17 609 - -
Vra8g2393 630 Gene3D Laminin 472 522 - -
Vra8g2393 630 CDD PA_VSR 52 179 - -
Vra8g2393 630 Pfam PA domain 63 162 IPR003137 -
Vra8g2393 630 SUPERFAMILY PA domain 32 148 IPR046450 -
Vra8g2393 630 Coils Coil 615 630 - -
Vra8g2393 630 MobiDBLite consensus disorder prediction 346 368 - -
Vra8g2393 630 CDD EGF_CA 518 546 - -
Vra8g2393 630 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 17 609 - -
Vra8g2393 630 Pfam Complement Clr-like EGF-like 501 521 IPR026823 -
Vra8g2393 630 Gene3D Laminin 523 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2393 Vra-Chr8 42128429 42134039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2393 25 630 Miscellaneous Gene Families AT2G14740 83.828 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2393 - - gmx:100803958 1272.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2393 8 42128429 42134039 Vra8g2393 8 42128429 42134039 ECH
Vra11g0031 11 259059 263340 Vra8g2393 8 42128429 42134039 PCT