Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0031 ATGAAGGTTTGGAGATGGTTGCTGAGTTTGTTTGTGGGGTTATTGTTGCCTGTGTCGATAATGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGGCGTCGCCGGAGAAAATAAGAGGCACTCACGACAGTGCCATTGGGAACTTCGGCATCCCTCAATACGGTGGTAGCATGGCGGGGAACGTCGTTTACCCAAAGGATAACAAGAAAGGTTGTAAAGAGTTTGACGAGTCTGGGATTTCCTTCAAATCAAGTCCCGGTGCTCTTCCCACCATTGTTCTGCTCGATCGCGGAAGTTGCTTCTTTGCATTGAAGGTCTGGAATGCTCAGAAGGCTGGAGCTTCTGCGGTTCTTGTTGCAGATGATGTTGAGGAGCCCTTGATAACTATGGACACACCTGAGGAGGATGGCTCGTCTGCCAAATATGTGGAGAACATAACTATACCATCTGCTCTTGTTGGAAAAAATTTTGGTGAAAAGTTAAAGGATGCCATAAGTGGTGGGGACATGGTCAACGTAAATCTTGATTGGAGAGAGTCTGTCCCTCACCCAGATGATCGTGTGGAGTATGAGTTGTGGAGCAACAGCAATGATGAGTGTGGAGTTAAGTGTGACATGTTGATGGAATTTGTGAAGGATTTCAAGGGCGCAGCACAGATACTAGAGAAAGGCGGTTACACTCAGTTTACACCCCATTATATAACTTGGTACTGTCCTCATGCTTTCACATTGAGCAAACAGTGCAAGTCTCAATGCATAAATCATGGAAGATATTGTGCTCCAGACCCTGAGCAGGACTTCAGCACAGGTTATGACGGGAAAGATGTGGTTGTTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAATGAAACTGGAAAGCCTTGGGTCTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAGTACAATAAGGAATGTGCAGATACTGTTATTAAATCACTGGGTCTTAATATTGAAAAGATTGGAAAATGCATGGGCGATCCAGAAGCTGATGCTGATAATCCTGTCTTGAAAGAAGAGCAAGATGCCCAAATTGGAAAGGGATCACGAGGTGATGTTACCATCTTGCCTACTCTCGTGGTCAATAACCGACAATATCGAGGAAAATTGGAGAAAGGGGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCCTGAGCACTGATGTGGAGACAAATGAGTGTTTGACAAACAATGGTGGTTGTTGGCAGGATACAGCAGCTAACATCACTGCGTGCAAGGATACATTCCGTGGTAGAGTATGTGAATGCCCCCTGGTTGACGGTGTTCAATTCAAGGGAGATGGTTATACATCTTGTGAAGCAAGAGGACTTGGACGTTGCAAGATAAACAATGGAGGATGTTGGCATGATGCCCGAAATGGACATGCATTTTCTGCTTGTTTGGATAACGGAGGGGTAAAATGCCAGTGTCCCACAGGATTTAAAGGTGATGGTGTCAAAAGTTGTGAAGATATTGACGAATGCAGAGAGAAGAAGGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATGACTGCAGTTGTAGTGGAGATCTCCTATATATGAGGGACCACGATACCTGCATAAGTAAAATTGGAAGTCAGGGAAGATCTACTTGGGCTGCTTTTTGGCTGATTCTACTTGGCGTGGTTATGATTTCTGGTGGGGCATTCCTAGTGTACAAGTATAGAATAAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCCTGGACAGCCAAGCAGAAGTTCCAAATCATGTGAACGATGAAAGAACATGA 1881 0.4471 MKVWRWLLSLFVGLLLPVSIMGRFVVEKNSLRVASPEKIRGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDESGISFKSSPGALPTIVLLDRGSCFFALKVWNAQKAGASAVLVADDVEEPLITMDTPEEDGSSAKYVENITIPSALVGKNFGEKLKDAISGGDMVNVNLDWRESVPHPDDRVEYELWSNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVFKVANETGKPWVWWDYVTDFQIRCPMKEKKYNKECADTVIKSLGLNIEKIGKCMGDPEADADNPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSTDVETNECLTNNGGCWQDTAANITACKDTFRGRVCECPLVDGVQFKGDGYTSCEARGLGRCKINNGGCWHDARNGHAFSACLDNGGVKCQCPTGFKGDGVKSCEDIDECREKKACQCPECSCKNTWGSYDCSCSGDLLYMRDHDTCISKIGSQGRSTWAAFWLILLGVVMISGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDERT* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0031 626 Gene3D Laminin 520 557 - -
Vra11g0031 626 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 11 605 - -
Vra11g0031 626 Pfam PA domain 60 162 IPR003137 -
Vra11g0031 626 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Vra11g0031 626 Pfam Complement Clr-like EGF-like 498 518 IPR026823 -
Vra11g0031 626 SMART egfca_6 515 557 IPR001881 GO:0005509
Vra11g0031 626 CDD PA_VSR 49 176 - -
Vra11g0031 626 Gene3D - 21 185 - -
Vra11g0031 626 CDD EGF_CA 515 543 - -
Vra11g0031 626 Gene3D Laminin 469 519 - -
Vra11g0031 626 Gene3D Laminin 408 464 - -
Vra11g0031 626 SUPERFAMILY PA domain 92 169 IPR046450 -
Vra11g0031 626 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0031 Vra-Chr11 259059 263340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0031 22 626 Miscellaneous Gene Families AT2G14740 84.959 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0031 - - gmx:100820115 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0031 11 259059 263340 Vra11g0031 11 259059 263340 ECH
Vra11g0031 11 259059 263340 Vra8g2393 8 42128429 42134039 PCT