Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2293 ATGGCAATAGACTGCATAACGAGCATGATCATGCCTCAACCCTCCAACCAAGAAATCAAAGAACAAGATGAACACCCTTTTGTCTTTGATGCCTCAGTCCTCAGACACCAACTTCACATACCCTCTCAGTTCATTTGGCCTGATGAGGAGAAAGCATGCTTGGATGAGCCTGAGTTACAGGTTCCATTCATTGACTTGGGAGGCTTCCTCTCCGGTGACCCTCTTGCTGCCACCCAAGCTTCCAGACTCGTCGGTGAAGCATGTCAAAAACATGGCTTCTTTCTCGTTGTCAACCATGGGATTGACCGCCAGTTGATATCCGATGCTCACCTTTACATGGACCACTTCTTTTCCCTTCCCCTGTCTCACAAACAGAGGGCTCAGAGGATGCCAGGGGAGCACTGCGGCTATGCCAGTAGCTTCACCGCCAGGTTCTCCTCTAAGCTCCCTTGGAAAGAGACCCTTTCCTTTCAGTATTCCGCATGCAATAACTCACCAACCCTTGTCAAGGACTACTTATGCGATAAAATGGGCAGAGAGTTTCAGCAATTTGGGAATGTTTACCAGGACTACTGTGAAGCCATGAGCAATCTTTCTTTAGGTATAATGGAGCTTCTGGGAATGAGCCTTGGAGTGGGTAGAGCTTATTTCAGGGAGTTCTTTGAAGAGAATAGCTCGATAATGAGGCTGAATTACTATCCTCCGTGTCAAAAACCAGAGCTGACTTTAGGAACTGGACCTCATTGCGATCCAACCTCTTTGACCATTCTTCATCAAGACCAAGTGGGAGGCCTGCAAGTTTGTGTTGACAATGAGTGGCATTCCATTAAACCTGCTTTGAATGCTTTCGTGGTGAATGTTGGCGATACCTTCATGGCTCTTTCAAATGGGAGATACAAGAGCTGCTTGCACAGGGCAGTGGTGAACAGGGAGACAACAAGAAAATCTCTTGCTTTCTTTTTGTGTCCGAGAAGTGACAAGGTGGTGAGTCCACCATGTGAATTAGTGGACAAATTGAGGCCAAGGCTGTACCCAGATTTTACATGGCCCATGCTCCTTGAGTTCACTCAAAAGCATTACAGAGCTGACATGAAAACCCTTGAAGCATTTACCAACTGGCTTCAACGGAAAACACAACACTCATCAACCCAACTTCCAACATAA 1164 0.4665 MAIDCITSMIMPQPSNQEIKEQDEHPFVFDASVLRHQLHIPSQFIWPDEEKACLDEPELQVPFIDLGGFLSGDPLAATQASRLVGEACQKHGFFLVVNHGIDRQLISDAHLYMDHFFSLPLSHKQRAQRMPGEHCGYASSFTARFSSKLPWKETLSFQYSACNNSPTLVKDYLCDKMGREFQQFGNVYQDYCEAMSNLSLGIMELLGMSLGVGRAYFREFFEENSSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVCVDNEWHSIKPALNAFVVNVGDTFMALSNGRYKSCLHRAVVNRETTRKSLAFFLCPRSDKVVSPPCELVDKLRPRLYPDFTWPMLLEFTQKHYRADMKTLEAFTNWLQRKTQHSSTQLPT* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2293 387 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 20 375 - -
Vra8g2293 387 PANTHER GIBBERELLIN 20-OXIDASE 20 375 - -
Vra8g2293 387 PRINTS Isopenicillin N synthase signature 84 101 - -
Vra8g2293 387 PRINTS Isopenicillin N synthase signature 248 269 - -
Vra8g2293 387 PRINTS Isopenicillin N synthase signature 283 309 - -
Vra8g2293 387 Gene3D - 32 361 IPR027443 -
Vra8g2293 387 SUPERFAMILY Clavaminate synthase-like 34 363 - -
Vra8g2293 387 Pfam non-haem dioxygenase in morphine synthesis N-terminal 61 166 IPR026992 -
Vra8g2293 387 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 224 323 IPR005123 -
Vra8g2293 387 Pfam 2OG-Fe(II) oxygenase superfamily 226 323 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2293 Vra-Chr8 41206212 41207982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2293 38 373 Glycosyltransferase AT5G59530 26.822 6.33e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2293 K05282 - gmx:100816992 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2293 8 41206212 41207982 Vra8g2293 8 41206212 41207982 ECH
Vra1g0931 1 10860813 10862637 Vra8g2293 8 41206212 41207982 PCT