Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0931 ATGGCCATAGACTGCATGACAAATATACAAACCATGTCTCAGCCACAAAAGCAGCAGCAGCAGCAAGACCACAAAGAAGATGAAACTCCATTGGTTTTTGATGCCTCACTTCTAAGGCACCAACTCGACCTACCAAAGCAATTCATTTGGCCTGATGAGGAGAAGCCATGCATGAATGTGCCTGAGCTTGTTGTCCCTCTCATTGACCTGAGGGGATTCCTCTCTGGTGACCCTGTTGCCACAATGGAAGCTGCAAGAATGGTTGGTGAAGCATGCCAAAAGCATGGTTTCTTTCTGGTAGTCAACCATGGGATTGATGCCAACTTAATCTCTCATGCTCATAGCTACATGGATGACTTCTTTGAGGTTCCCCTGCCTCAGAAACAGAGAGCTCAGAGGAAAACAGGGGAACACTGTGGCTATGCCAGTAGCTTCACTGGCAGATTCTCTTCCAAGCTTCCATGGAAAGAGACACTCTCTTTTCAGTACTCAGCTGAGGAGAAATCATCCACTATTGTCAAAGACTACTTGTGCAACACATTGGGTCAGGAGTTTGAGCAATTTGGGAGGGTTTACCAGGACTATTGTGAAGGCATGAGTAATCTTTCTTTGGGGATAATGGAACTTTTGGGAATGAGTCTTGGTGTTGGAAAAGCATGTTTCAGAGAGTTCTTTGAAGAGAACAACTCAATAATGAGGCTGAATTACTACCCTCCTTGTCAAAAACCTGACCTGACTTTGGGCACAGGACCTCACTGTGACCCAACATCTTTGACCATTCTTCACCAGGATCAAGTGGGAGGCCTCCAAGTTTTTGTTGAAAATGAGTGGCATTCCATTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGGCTCTCTCCAATGGGAGGTACAAGAGTTGCTTGCATAGGGCAGTGGTGAACAGCAAGACAACAAGAAAATCTCTTGCTTTCTTTTTGTGTCCAAAAAGTGATAAGGTGGTGAGTCCACCAAGTGAATTGGTGGATGACTTGACCCCAAGGATGTACCCAGATTTTACATGGCCTATGCTGCTAGAGTTTACTCAGAAACACTACAGAGCTGACATGAAAACCCTTGAAGCATTCACCAACTGGCTTCAACACAAAAGGACCTGA 1152 0.4497 MAIDCMTNIQTMSQPQKQQQQQDHKEDETPLVFDASLLRHQLDLPKQFIWPDEEKPCMNVPELVVPLIDLRGFLSGDPVATMEAARMVGEACQKHGFFLVVNHGIDANLISHAHSYMDDFFEVPLPQKQRAQRKTGEHCGYASSFTGRFSSKLPWKETLSFQYSAEEKSSTIVKDYLCNTLGQEFEQFGRVYQDYCEGMSNLSLGIMELLGMSLGVGKACFREFFEENNSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWHSISPNFNAFVVNIGDTFMALSNGRYKSCLHRAVVNSKTTRKSLAFFLCPKSDKVVSPPSELVDDLTPRMYPDFTWPMLLEFTQKHYRADMKTLEAFTNWLQHKRT* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0931 383 Pfam non-haem dioxygenase in morphine synthesis N-terminal 65 169 IPR026992 -
Vra1g0931 383 PRINTS Isopenicillin N synthase signature 88 105 - -
Vra1g0931 383 PRINTS Isopenicillin N synthase signature 252 273 - -
Vra1g0931 383 PRINTS Isopenicillin N synthase signature 287 313 - -
Vra1g0931 383 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 20 380 - -
Vra1g0931 383 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 227 327 IPR005123 -
Vra1g0931 383 SUPERFAMILY Clavaminate synthase-like 40 367 - -
Vra1g0931 383 Pfam 2OG-Fe(II) oxygenase superfamily 229 327 IPR044861 -
Vra1g0931 383 PANTHER ISOPENICILLIN N SYNTHASE-RELATED 20 380 - -
Vra1g0931 383 Gene3D - 35 365 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0931 Vra-Chr1 10860813 10862637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0931 43 377 Glycosyltransferase AT5G59530 28.324 1.46e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0931 K05282 - gmx:100305378 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0931 1 10860813 10862637 Vra1g0931 1 10860813 10862637 ECH
Vra1g0931 1 10860813 10862637 Vra8g2293 8 41206212 41207982 PCT