Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2273 ATGTGTCATCTAACACCCCACCTCCCTTGCAAAGCCAACTCAGACCAAGAGTATCTAATTTCAATGAAACTCCAAAAGACAGAGCAACCGGACATGACGATCACCAGCCCCTTGATCCACAAGGGTATCGTCACAACACCCCGTGTGGAGAAGGACTCCCCAGCAATGCAAACCCGTCTTTTCAAAGAACTAATTTCCATAGCCAAAATTTCTCTCCCCATGATCCTTACTGGCCTCTTACTCTATTGCCGCTCAATGATCTCCATGCTCTTCCTCGGCCACCTCGGAGAGCTTGCCTTAGCTGGCGGTTCACTCGCCGTTGGCTTCGCAAACATCACCGGATACTCAATCCTCTCCGGCCTTGCTGTCGGAATGGAACCCATTTGCGGACAGGCTTACGGTGCCAAGAAGTTCACCCTCCTCGGTCTCTGCCTTCAAAGAACCGTTCTCCTCCTCCTCTTCACTTCTCTTCCAATCTCTCTCCTTTGGCTCTACATGAAGCATATCCTTCTCTTCTGTGGCCAGGACGAGGACATAGCCACACAAGCACAGTTCTATCTTCTCTACTCCATCCCCGACCTCTTAACACAATCGTTTCTTCACCCTTTAAGAATTTACCTTCGAACCCAATCCATTACTCTGCCTCTCACCCTTTGCGCCACTCTGTCAATTCTCCTCCACGTCCCCATCAACTACCTCCTCGTTTTCCACCTCAATCTGGGAATCAAAGGCGTGGCTCTCAGCGGGGTGTGGACCAACCTCAACCTTGTAGTTTCTTTGATTCTCTACGTAGTCTTCTCCGGCACGCATAAGAAAACATGGGGAGGTTTTTCCGTGGAGTGCTTCACGCAATGGAAGTCGCTTCTCAATTTGGCTATCCCGAGCTGCATTTCTGTGTGCCTCGAATGGTGGTGGTATGAGATCATGATTTTGTTATGCGGCTTGCTTGTAAATCCCAGAGCAACCGTGGCCTCCATGGGGATTCTGATCCAAACCACTTCCTTGCTCTACATTTTTCCATCGTCGTTAAGCTTCAGCGTGTCTACACGAGTTGGCAACAAACTGGGCGCCCAAAAGCCCTCGAAGGCGAGACTTTCTGCCACAGTTGGCCTCACTTGCAGCTTCGTGTTGGGGGCTTTAGCTTTGGTTTTTACCATTGTGGTTAGGAACATATGGGCCAGCATGTTCACTCAAGACAAGGAAATAATAACTTTGACCTCATTGGTGTTACCGATTATAGGACTTTGCGAGCTCGGTAACTGTCCTCAAACAACGGGGTGCGGGGTGCTGAGAGGTACCGCAAGGCCTAAAGTCGGTGCTAACATTAACTTAGGTTGTTTCTATCTTGTAGGAATGCCTGTGGCCGTTTGGCTTGGTTTCTTTGCTGGGTTTGATTTTCAAGGGTTGTGGCTTGGGTTACTTGCGGCTCAGGGGTCTTGCGCGGTGACCATGTTGGTGGTTCTGAGTCGAACGGATTGGGAATTTGAGGCTCTAAGAGCCAAGAAACTAACCAGTGTTGTTGTTGTTGTCGATGATGACGATGATGGCAGCAAGAAGGTTGGTGCAGAGAAGCCAGCCAAAGCTGAAATCAAGGAAGATTCTTTATCATCATTAGCGGAATCAGATGAAGATAAACAATCGTGGGTTTAA 1650 0.4903 MCHLTPHLPCKANSDQEYLISMKLQKTEQPDMTITSPLIHKGIVTTPRVEKDSPAMQTRLFKELISIAKISLPMILTGLLLYCRSMISMLFLGHLGELALAGGSLAVGFANITGYSILSGLAVGMEPICGQAYGAKKFTLLGLCLQRTVLLLLFTSLPISLLWLYMKHILLFCGQDEDIATQAQFYLLYSIPDLLTQSFLHPLRIYLRTQSITLPLTLCATLSILLHVPINYLLVFHLNLGIKGVALSGVWTNLNLVVSLILYVVFSGTHKKTWGGFSVECFTQWKSLLNLAIPSCISVCLEWWWYEIMILLCGLLVNPRATVASMGILIQTTSLLYIFPSSLSFSVSTRVGNKLGAQKPSKARLSATVGLTCSFVLGALALVFTIVVRNIWASMFTQDKEIITLTSLVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYLVGMPVAVWLGFFAGFDFQGLWLGLLAAQGSCAVTMLVVLSRTDWEFEALRAKKLTSVVVVVDDDDDGSKKVGAEKPAKAEIKEDSLSSLAESDEDKQSWV* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2273 549 TIGRFAM matE: MATE efflux family protein 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra8g2273 549 Pfam MatE 294 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra8g2273 549 Pfam MatE 73 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra8g2273 549 PANTHER MULTIDRUG RESISTANCE PROTEIN 45 517 - -
Vra8g2273 549 CDD MATE_eukaryotic 63 497 IPR045069 GO:0042910|GO:1990961
Vra8g2273 549 PANTHER PROTEIN DETOXIFICATION 45 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2273 Vra-Chr8 40991775 40993896 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2273 K03327 - gmx:100777255 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2273 8 40991775 40993896 Vra11g0310 11 2215198 2217080 ECH
Vra8g2273 8 40991775 40993896 Vra8g2273 8 40991775 40993896 ECH