Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0310 ATGTCTGAGTTATCATCATCTACCTCCACTTTGGGTGAGAGCAATGAGGGCCATCCACACACGCACACGACCAAAATTCAGGAGCCAGACATGTTAGCCCTTTTGATCCCCAAACCCCCAACAACATTCCGACAACCCCAAAAAAACCTTAAAAACACCCATTTTTCCCTTGCCTTCAACGAAGCCAAATGCATATTAAACACAGCATTACCCATGGTGCTCACAGCTCTATTACTCTACTCTCGCTCCGTCATCTCTATGTTGTTCCTCGGTCGTGCTGGTGAGCTTGCCTTAGCTGGTGGTTCTCTCGCCATTGGATTCGCCAACATCACTGGTTACTCTATTCTCTCGGGCCTCGCCATGGGGATGGAACCCATCTGCGGCCAGGCTTTTGGGGCCAAACGTTTTAAACTTTTGGGCTTTGCCATGCAGAGGACAATTGTTCTTCTTCTTTTAACTTCCATTTTTATATCATTCTTGTGGCTCAACATGAAGAAGATACTGCTCCTCTGTGGCCAACAAGAAGACATCGCCACCCAAGCTCAATCCTTCATACTCTATTCTCTTCCCGATCTCGTTGCACAATCATTGCTACACCCTCTGCGAATCTACTTACGAAGTCAATCCATAACCCTCCCCCTCACGTACACTGCCTCTCTCTCTATTCTCCTTCACGTCCCCATCAACTACCTCCTCGTCTCCGTGTTCAAACTTGGAATCAAAGGCATCGCTTTAGGTGCCGTTTGGACCAATTTCAACCTTGTCTTTTCGTTGATTATCTACATCTGGGTATCCCAAATATACAAGAAAACATGGACCCCTATTTCCTTGAAGGGCATCTTCTGCGGTTGGAAGGCGCTTTTGGATTTGGCAATCCCGAGTTGCATTTCAGTTTGCCTGGAATGGTGGTGGTACGAAATCATGATTTTACTTTGCGGGTTATTGATCAATCCCCAAGCAACCGTTGCATCGATGGGGGTTCTGATTCAAACCACCGCATTGATATACATTTTCCCTTCTTCCCTGAGCTTTGCTGTTTCAACACGTGTTGGGAACGAAGTGGGTGCGGAGAATCCTAAAAGGGCCAGACTCGCAGCACTCGTGGGGCTTTCTTTCAGTTATGTTTTGGGATTGTCGGCCTTGTTTTTTGCTGTTTCGGTGAGGCACGTGTGGGCGTCCATGTTCACACGTGACAAGGAGATCATTACTTTGACGTCGATGGTGTTGCCCATCATTGGTCTCTGCGAGCTTGGGAACTGTCCGCAAACAACGATTTGCGGCGTCCTGAGAGGAACCGCGAGACCGAAATTGGGAGCGAATATAAATTTGGGTTGCTTTTATATTGTGGGAATGCCCGTTGCGGTGTGGTTGGGTTTCTTCGCGGGCTTTGATTTCAAAGGCTTGTGGCTGGGTTTGTTGGCCGCCCAAGCATCGTGTATGATCACCATGTTGTTCGTGTTGGCTCGCACCAACTGGGAGGGTCAGGTCGAAAGAGCCAAACAACTCACATCTTCTGATGCTACTGAGGAGGAACACGAACAGCAAGACCAATCCTCAACAGAGGAATCCTCTGATTCAAATGTTTGA 1587 0.4795 MSELSSSTSTLGESNEGHPHTHTTKIQEPDMLALLIPKPPTTFRQPQKNLKNTHFSLAFNEAKCILNTALPMVLTALLLYSRSVISMLFLGRAGELALAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGFAMQRTIVLLLLTSIFISFLWLNMKKILLLCGQQEDIATQAQSFILYSLPDLVAQSLLHPLRIYLRSQSITLPLTYTASLSILLHVPINYLLVSVFKLGIKGIALGAVWTNFNLVFSLIIYIWVSQIYKKTWTPISLKGIFCGWKALLDLAIPSCISVCLEWWWYEIMILLCGLLINPQATVASMGVLIQTTALIYIFPSSLSFAVSTRVGNEVGAENPKRARLAALVGLSFSYVLGLSALFFAVSVRHVWASMFTRDKEIITLTSMVLPIIGLCELGNCPQTTICGVLRGTARPKLGANINLGCFYIVGMPVAVWLGFFAGFDFKGLWLGLLAAQASCMITMLFVLARTNWEGQVERAKQLTSSDATEEEHEQQDQSSTEESSDSNV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0310 528 MobiDBLite consensus disorder prediction 1 24 - -
Vra11g0310 528 TIGRFAM matE: MATE efflux family protein 71 469 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g0310 528 PANTHER MULTIDRUG RESISTANCE PROTEIN 41 511 - -
Vra11g0310 528 MobiDBLite consensus disorder prediction 499 528 - -
Vra11g0310 528 CDD MATE_eukaryotic 61 498 IPR045069 GO:0042910|GO:1990961
Vra11g0310 528 Pfam MatE 71 231 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g0310 528 Pfam MatE 293 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra11g0310 528 MobiDBLite consensus disorder prediction 1 17 - -
Vra11g0310 528 MobiDBLite consensus disorder prediction 503 519 - -
Vra11g0310 528 PANTHER PROTEIN DETOXIFICATION 41 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0310 Vra-Chr11 2215198 2217080 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0310 K03327 - gmx:100811560 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0310 11 2215198 2217080 Vra11g0310 11 2215198 2217080 ECH
Vra8g2273 8 40991775 40993896 Vra11g0310 11 2215198 2217080 ECH