Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2263 ATGGGAAATTCGTTCGGGTGTTCGGCCTCCGGCGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGACTTGGTGGAGGCGAAGATGCTTTTGAACTGTAACCCTTGTCTCGCCAAGTATTCAACATTCGGTGGCCTCAATTCCCCTCTTCATTTTGCAGCAGCCAAAGGCCACAACGAGATCGTGGCATTGCTGCTGGAGAATGGAGCTGATGTGAATTCCAGAAATTATTGTGGCCAGACGGCCCTGATGCAAGCTTGTAGATATGGGCACTGGGAAGTTGTACAGACACTTCTACTCTTCAGATGCAATGTTATGAGGGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGCATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTACCAAGTGCACCTTATCAAGCTATACATGCTTGCACAAATATTGACAAGGATGGTGGATCAAATGTGAAAGGAAAACATGAGCATAGTGCCCTGTCCAAGTTTGTAAATAAGACTGCTGATGGTGGTATCACTGCCCTTCACATGGCTGCGTTAAATGGATACTTTGATTGTGTACAACTTCTGCTTGATCTTAACGCCAATGTGTCTGCTGTGACATTTCATTACGGAACATCAATGGATTTAATCGGAGCTGGAAGTACTCCTTTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGATCCTTGTTGCACGAGGTGCAAGTCGGATGGCTTTAAATTGCAATGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGCCGTCATTGGCTTGAACAATTACTGGCACCCAGTTCTGATACCACAGTACCTACATTCTCTCATTCAAACTACTTGTCCTTGCCTCTCATGAGTGTGCTCAACATAGCTAGAGAGTATGGATTACAATCATCTACAACCTCCTCTGACGAGATTGACTTTTGTGCTGTATGTCTGGAGAGACCTTGTTCCGTGGCTGCTGAAGGGTGTGGGCATGAGCTTTGTGTAAGATGTGCGCTTTATCTTTGTTCAACAAACAATGTTTCTTCTGAAATGGTTGGCCCTCCAGGCTCTATCCCCTGCCCTCTTTGTAGACATGGAGTTGTCTCTTTTGTCAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAGCTACACGTGTCTTTGGGCCTGTGTACCCCTTGCATGCTACATCCACGTGACCTAGATCAGCCATCCATCTCTCATACACCTGAGATTGGAAGAAATCGTGTAGCTTCTGTTCCATCAGAAATACTCTGCCCCGTCACTTGTAGTCCATTCCCATCTATGGCAATTCCCCTATGTACCTGCAATGATGGTCCATGTCCATCATTTGAACCCCGAGAAGTAGAAACACGAGATGAATCACCTCATCACTCTCAAGCATCAACAATGGATCAGGATAAAATTGAAGGGCCAAGATTGGATAAAACAACTTGCTCTAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAGATAAATGCTTGA 1539 0.4594 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSAPYQAIHACTNIDKDGGSNVKGKHEHSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILVARGASRMALNCNGWLPLDIARMWGRHWLEQLLAPSSDTTVPTFSHSNYLSLPLMSVLNIAREYGLQSSTTSSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMVGPPGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDLDQPSISHTPEIGRNRVASVPSEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPREVETRDESPHHSQASTMDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2263 512 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Vra8g2263 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 391 IPR013083 -
Vra8g2263 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Vra8g2263 512 Gene3D - 148 297 IPR036770 -
Vra8g2263 512 Pfam Ankyrin repeats (many copies) 220 261 IPR002110 GO:0005515
Vra8g2263 512 Pfam Ankyrin repeats (many copies) 171 217 IPR002110 GO:0005515
Vra8g2263 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 512 - -
Vra8g2263 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Vra8g2263 512 MobiDBLite consensus disorder prediction 457 483 - -
Vra8g2263 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Vra8g2263 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Vra8g2263 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Vra8g2263 512 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Vra8g2263 512 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Vra8g2263 512 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Vra8g2263 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Vra8g2263 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Vra8g2263 512 Gene3D - 6 147 IPR036770 -
Vra8g2263 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Vra8g2263 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Vra8g2263 512 SUPERFAMILY RING/U-box 313 375 - -
Vra8g2263 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Vra8g2263 512 PANTHER HOMEOBOX PROTEIN WARIAI 1 512 - -
Vra8g2263 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Vra8g2263 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Vra8g2263 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vra8g2263 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Vra8g2263 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2263 Vra-Chr8 40887927 40892765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2263 14 280 Miscellaneous Gene Families AT2G31820 28.044 3.18e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2263 K19044 - gmx:100785638 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2263 8 40887927 40892765 Vra8g2263 8 40887927 40892765 ECH
Vra1g1906 1 36213341 36226622 Vra8g2263 8 40887927 40892765 PCT