Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1906 ATGGGGAATTCATTTGGGTGCTCGGCGTCCGGTGAGAGGTTGGTGTCGGCGGCGAGAGACGGCGATTTGGTTGAGGCGAAGATGCTTCTAGAATGCAACCCTGGTCTTGCAAAGTACTCCACTTTTGGGGGTCTCAATTCGCCTCTTCATTTTGCAGCTTCTAAAGGCCATAATGAGATTGTGGCATTGCTGCTTGAAAATGGAGCTGATGTGAGTTCAAGAAATTATTGTGGGCAGGTTATGAAAGCAGATTATCTCAGTGGGAGGACAGCTCTACACTTTGCAGCCATCAATGGACATGCAAGATGCATCAGACTTGTTGTTGCAGATTTTGTTCCAAGTGCTCCTTTTGAATCTTTACATGCTCGCATGGACGCAGAAATTGATGGATCAAATGTGAAAAACACACATGAACAAAGTGTGCTGTCGAGGTTTGTAAATAAAACAGCTGATGCTGGTATTACTGCCCTGCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTGATGCTAATGTGTCAGCTGCAACATTTCATTATGGAACCTCAATGGATTTAATTGGGGCTGGAAGTACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTGAAATGCTGTCAGATCCTCCTCGCAAGAGGTGCCAGTCGGACGGCTTTGAATTGCAATGGATGGCTTCCACTTGATGTTGCTAGGATGTGGGGACGTCATTGGCTTGAACCATTGCTGGCACCCACTTCTCAAGCCACAATATTGACATTTCCTTCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTGCTCAACATTGCCAGAGACTGTGGATTGCAATCAGCTGCAACCTCTTCCAGTGAAGTTGATGTTTGTGCTGTCTGCCTGGAGAGGTCATGTTCTGTGGCTGCTGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGTTCAACGAGCAATGTTTCTTCTGAAACTTGTGGTCCTCCTGGCTCTATCCCTTGCCCTCTTTGCAGACATGGAATTGTCTCTTTTGTGAAGTTACCAGGTTCCCAAGCAAAAGAAAACAAAATGCACGTGTCTCTCAGCCTATGTACCCCATGCATGCTACACCCACGTGACCAAGATAACTCTTCTGTTTCTCATACTCCTGAGATTCGAAGGAACCGTGTAGCTTCAGTTCCATCAGAGATGCTTTGCCCTGTCACTTGTACTCCATTTCCTTCTGTAGCTATTCCTCTCTGCACTTGCAATGATGGTCCTTGCCCTACATTTGAATCCCGGGAAGCAGCAACGCCAGATGAACCGGTTCGCCGCTCGCAAGCATCCTTGACGATGGATCGCGATAAAATGGAAGGTCCAAGGCTGGATAAGACAACATGTTCAGGCATGTTTTGGGGTAGAAGAAGTTACAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1467 0.4588 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVSSRNYCGQVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFESLHARMDAEIDGSNVKNTHEQSVLSRFVNKTADAGITALHMAALNGYFDCVQLLLDLDANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRTALNCNGWLPLDVARMWGRHWLEPLLAPTSQATILTFPSSNYLSLPLMSVLNIARDCGLQSAATSSSEVDVCAVCLERSCSVAAEGCGHELCVRCALYLCSTSNVSSETCGPPGSIPCPLCRHGIVSFVKLPGSQAKENKMHVSLSLCTPCMLHPRDQDNSSVSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPTFESREAATPDEPVRRSQASLTMDRDKMEGPRLDKTTCSGMFWGRRSYSREHQCNSEINA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1906 488 SMART ANK_2a 195 224 IPR002110 GO:0005515
Vra1g1906 488 SMART ANK_2a 87 118 IPR002110 GO:0005515
Vra1g1906 488 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vra1g1906 488 SMART ANK_2a 152 181 IPR002110 GO:0005515
Vra1g1906 488 Gene3D - 118 245 IPR036770 -
Vra1g1906 488 SUPERFAMILY Ankyrin repeat 14 248 IPR036770 -
Vra1g1906 488 ProSiteProfiles Ankyrin repeat profile. 87 108 IPR002110 GO:0005515
Vra1g1906 488 SUPERFAMILY RING/U-box 293 350 - -
Vra1g1906 488 MobiDBLite consensus disorder prediction 433 459 - -
Vra1g1906 488 ProSiteProfiles Ankyrin repeat region circular profile. 152 181 - -
Vra1g1906 488 ProSiteProfiles Zinc finger RING-type profile. 294 344 IPR001841 -
Vra1g1906 488 MobiDBLite consensus disorder prediction 436 459 - -
Vra1g1906 488 Pfam Ankyrin repeats (many copies) 146 192 IPR002110 GO:0005515
Vra1g1906 488 Pfam Ankyrin repeats (many copies) 195 236 IPR002110 GO:0005515
Vra1g1906 488 Gene3D - 8 112 IPR036770 -
Vra1g1906 488 ProSiteProfiles Ankyrin repeat region circular profile. 87 108 - -
Vra1g1906 488 ProSitePatterns Zinc finger RING-type signature. 309 318 IPR017907 -
Vra1g1906 488 Pfam Ankyrin repeats (many copies) 46 106 IPR002110 GO:0005515
Vra1g1906 488 ProSiteProfiles Ankyrin repeat region circular profile. 195 221 - -
Vra1g1906 488 PANTHER HOMEOBOX PROTEIN WARIAI 1 80 - -
Vra1g1906 488 PANTHER HOMEOBOX PROTEIN WARIAI 80 488 - -
Vra1g1906 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 366 IPR013083 -
Vra1g1906 488 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Vra1g1906 488 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Vra1g1906 488 PRINTS Ankyrin repeat signature 168 182 IPR002110 GO:0005515
Vra1g1906 488 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Vra1g1906 488 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Vra1g1906 488 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Vra1g1906 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 80 - -
Vra1g1906 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 80 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1906 Vra-Chr1 36213341 36226622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1906 17 248 Miscellaneous Gene Families AT5G02620 27.344 3.22e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1906 K19044 - gmx:100812809 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1906 1 36213341 36226622 Vra1g1906 1 36213341 36226622 ECH
Vra1g1906 1 36213341 36226622 Vra8g2263 8 40887927 40892765 PCT