Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2173 ATGGGTAAGAGCAAAAACTCTGATGCTTTTTCTCTTCTCCTTCCCCTCCTCTTCTTCACTCTTGTCGGAACCTCTCATGCCGGCGGCATAGCCATCTACTGGGGCCAAAACGGCAACGAGGGCACCCTTTCCGAAGCATGTGCCACGGGAAGATACACTCACGTCAACATAGCTTTCCTCAACAAATTTGGCAATGGCCAAACCCCAGAAATGAACCTGGCTGGTCACTGCAACCCCGCCACCAATTCCTGCACAAAGTTCAGCGCTGAAATCAAGGACTGCCAAAGCAAAAACATCAAGGTGTTGCTTTCCATAGGTGGTGGCATTGGAAGCTACACTTTGGCTTCCGTTGAGGATGCAAGGAACGTTTCAACCTTCCTGTGGAACACTTTCTTGGGAGGCAAATCATCAGCAAGACCACTAGGTGATGCTGTGTTAGATGGCATAGATTTTGACATAGAACAAGGCTCAACAGAAAACTACGAGCACCTTGCACGTTTCCTTAAAGCGTATAGTAGAAAAGGGAAAAGGGTATACCTAGGTGCTGCCCCTCAGTGTCCAATTCCCGATAGGTTTTTAGGCACTGCCCTAGACACCGGCCTATTTGACTTTGTTTGGGTTCAGTTCTACAACAACCCTCCATGTCAGTATGCTGATGGGAACGTAACCAACCTTCTGAATTCTTGGAACCGTTGGACTAGTACAGTACCGGCTGGGAAGATATTCTTAGGGTTGCCAGCGGCTCCGGCAGCCGCTGGCAGCGGTTTCATCCCGGCCGATGTGTTGACGTCTCAAGTCCTGCCGGTGATTAAGGAGTCACCAAAATATGGTGGGGTGATGCTGTGGTCAAGATTCTTTGATGTCCAGAATGGGTATAGTACTTCAATTATTGGAAGCGTGTGA 903 0.4895 MGKSKNSDAFSLLLPLLFFTLVGTSHAGGIAIYWGQNGNEGTLSEACATGRYTHVNIAFLNKFGNGQTPEMNLAGHCNPATNSCTKFSAEIKDCQSKNIKVLLSIGGGIGSYTLASVEDARNVSTFLWNTFLGGKSSARPLGDAVLDGIDFDIEQGSTENYEHLARFLKAYSRKGKRVYLGAAPQCPIPDRFLGTALDTGLFDFVWVQFYNNPPCQYADGNVTNLLNSWNRWTSTVPAGKIFLGLPAAPAAAGSGFIPADVLTSQVLPVIKESPKYGGVMLWSRFFDVQNGYSTSIIGSV* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2173 300 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 300 IPR001223 GO:0005975
Vra8g2173 300 PANTHER ENDOCHITINASE 6 300 - -
Vra8g2173 300 PANTHER ACIDIC ENDOCHITINASE 6 300 - -
Vra8g2173 300 Pfam Glycosyl hydrolases family 18 30 285 IPR001223 GO:0005975
Vra8g2173 300 CDD GH18_hevamine_XipI_class_III 28 298 IPR045321 -
Vra8g2173 300 Gene3D Glycosidases 28 299 - -
Vra8g2173 300 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 146 154 IPR001579 GO:0004553|GO:0005975
Vra8g2173 300 SUPERFAMILY (Trans)glycosidases 25 296 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2173 Vra-Chr8 40114473 40115564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2173 28 300 Glycoside Hydrolase AT5G24090 67.399 6.53e-148 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2173 K01183 - gmx:100818728 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2173 8 40114473 40115564 Vra8g2173 8 40114473 40115564 ECH
Vra1g1676 1 30636545 30637756 Vra8g2173 8 40114473 40115564 PCT