Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1676 ATGGAATCCCTAAGCAAAGCCTCACTCCTCTTACTCCCTCTCTTGTTCCTTTCCCTGCTCAGCGATTCCCATGGTGAAGGAATAGCTGTGTACTGGGGCCAAAACGGTGGAGAAGGCAGCTTAGCAGAAACTTGTAACACCAAAAACTACCAATTTGTGAACATAGCCTTTTTGTCTACATTTGGCAATGGCCAAACCCCTCAACTCAACCTCGCTGGCCACTGTGATCCCCAGAGCAATGGTTGCACAGGGTTGAGCAGTGACATCACCACTTGCCAAAACGGTGGAGTCAAAGTCTTGCTCTCCCTTGGAGGAGGTGCTGGAAGCTACTCCCTCAACTCAGCTGAGGAAGCCAATCAACTTGCAACCTACCTCTGGGACAATTTCCTTGGAGGACAATCTGGGTCAAGACCATTAGGTGATGCAGTGTTGGATGGCATTGACTTTGACATTGAGTCTGGTGGAAGAGAACATTGGGATGAACTAGCCAGGGCACTCAGTGGGTTCAGTTCACAAAGAAAGGTGTATTTGTCTGCAGCTCCACAGTGCATAATCCCTGATGAACGCTTGGATTCTGCCATCCAAACTGGGCTTTTTGACTATGTCTGGGTTCAGTTCTACAATAACCCTTCATGCCAATACTCCAGTGGAAACACCGACAACTTGATCAGTTCATGGAACCAGTGGATCACTGTGCCAGCCACACAAGTCTTTATGGGGCTTCCTGCAGCAGAAGCAGCTGCTCCAAGTGGCGGTTTTGTCCCTTCTGATGTGTTAATTTCTCAGGTTCTTCCTAAGATAAAACAGTCTTCAAAGTATGGTGGAGTTATGCTATGGAGCAGATTCTATGATCTCCAAAATGATTACAGTAATAATATTATTGGCAGTGTTTAA 894 0.4676 MESLSKASLLLLPLLFLSLLSDSHGEGIAVYWGQNGGEGSLAETCNTKNYQFVNIAFLSTFGNGQTPQLNLAGHCDPQSNGCTGLSSDITTCQNGGVKVLLSLGGGAGSYSLNSAEEANQLATYLWDNFLGGQSGSRPLGDAVLDGIDFDIESGGREHWDELARALSGFSSQRKVYLSAAPQCIIPDERLDSAIQTGLFDYVWVQFYNNPSCQYSSGNTDNLISSWNQWITVPATQVFMGLPAAEAAAPSGGFVPSDVLISQVLPKIKQSSKYGGVMLWSRFYDLQNDYSNNIIGSV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1676 297 PANTHER ACIDIC ENDOCHITINASE 14 297 - -
Vra1g1676 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Vra1g1676 297 Gene3D Glycosidases 27 296 - -
Vra1g1676 297 SUPERFAMILY (Trans)glycosidases 23 292 IPR017853 -
Vra1g1676 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
Vra1g1676 297 PANTHER ENDOCHITINASE 14 297 - -
Vra1g1676 297 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Vra1g1676 297 CDD GH18_hevamine_XipI_class_III 27 295 IPR045321 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1676 Vra-Chr1 30636545 30637756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1676 17 297 Glycoside Hydrolase AT5G24090 61.484 1.02e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1676 K01183 - gmx:100815291 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1676 1 30636545 30637756 Vra8g2173 8 40114473 40115564 PCT