Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1703 ATGTCTCGAATATTCTCTGCATGGAACAAGAAGAAGCTGCATCTCAGTTTCTTGCCCAGTTTTTTCTCTTCTAGGCACAGCACCAGTACTGGACCTTTACGGCCGAGGATTCTCAGACTGTACAGTAGCAGCAATGGGGAGCCACCGCAGGATTGGCATCACGACGCTTCCGTGCCTTCGCAAACTCCTTTCAGTGTTAATTTTGTTCGGGCTGCCGCTGGGCCCCGCCAAGAGAACTCTGGGTGGGTCGGAGGCTCCAATTTGGGTAGGGATTTTCCGACTCCCAAGGAAATCTGCAAGGGACTCGATAAATTTGTTATTGGGCAACACAGGGCCAAGAAGGTGCTCTCTGTAGCGGTTTATAATCACTACAAGAGAATATTTAACGGGTCAGGGGAAGATGCGGGAATCTCCGAAGGATTGGATGATGACGATAATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGTTCAGGGAAGACGTTACTTGCAAAAACATTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCAACTACACTAACGCAGGCTGGTTATGTTGGAGAAGACGTTGAGTCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAAAGCTTGAATATTAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAACGTCCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACAAAGAACATCCTCTTCATATGTGGGGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGGCAAGATTCTTCAATTGGTTTTGGGGCACCAATCCGTGCCAATATGAGAGCTAGTGGGGTTACACATGCTGCAGTAACATCATCTTTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATCCCAGAGTTTATAGGACGGTTTCCGATCTTAGTTAGCTTATCAGCTCTAACTGAAGACCAACTCATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGCCAAGCAGTACAAGAAATTATTTGACATGAACGACGTAAAGCTACACTTCACAGAGAAAGCTCTTAGATTGATTTCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAATCATTTTAACGGAAGCTATGTTTGAGATTCCAGATGTTAAAGCAGGAAATGAAATGATTGATGCGGTAGTTGTTGATGAGGAGTCGGTAGGATCGGTAAATTTCCTTGGCTGTGGAGGAAAAATTCTTTGTGGAGAGGGTGCTTTAGATCGGTACCTAGCTAAGATGGAGAGTTCAGTGGTTAACCATGACGTAGCGGAACCAGACTTACAAGAGGGGGAATCAGAGATTTCATCAAGAGCTATGGGCATGTAA 1518 0.4447 MSRIFSAWNKKKLHLSFLPSFFSSRHSTSTGPLRPRILRLYSSSNGEPPQDWHHDASVPSQTPFSVNFVRAAAGPRQENSGWVGGSNLGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYKRIFNGSGEDAGISEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPIRANMRASGVTHAAVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLMQVLTEPKNALAKQYKKLFDMNDVKLHFTEKALRLISKKAMAKNTGARGLRALLEIILTEAMFEIPDVKAGNEMIDAVVVDEESVGSVNFLGCGGKILCGEGALDRYLAKMESSVVNHDVAEPDLQEGESEISSRAMGM* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1703 505 SMART ClpB_D2_small_2 361 454 IPR019489 -
Vra8g1703 505 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 89 451 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Vra8g1703 505 Pfam AAA domain (Cdc48 subfamily) 150 354 IPR003959 GO:0005524|GO:0016887
Vra8g1703 505 Gene3D - 87 359 IPR027417 -
Vra8g1703 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 447 IPR027417 -
Vra8g1703 505 CDD AAA 151 262 - -
Vra8g1703 505 SMART AAA_5 150 346 IPR003593 -
Vra8g1703 505 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 71 505 - -
Vra8g1703 505 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 71 505 - -
Vra8g1703 505 Gene3D - 360 457 - -
Vra8g1703 505 Pfam C-terminal, D2-small domain, of ClpB protein 361 430 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1703 Vra-Chr8 34202894 34209080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1703 154 253 Miscellaneous Gene Families AT3G02450 36.634 1.76e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1703 K03544 - gmx:100818418 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1703 8 34202894 34209080 Vra8g1703 8 34202894 34209080 ECH
Vra1g0889 1 10342643 10351758 Vra8g1703 8 34202894 34209080 PCT