Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0889 ATGTCGCGACTCTTTGGTAGATGGAAGAAGGCGAAGGAAATGGCATCGCTTTCGGGGTTTCTGCCACGTGGGCACCAGCGAATCGGGTTAAATTTTTGCCCAATTTCGACCCAGCTGAATATGATATCCGGCCACCGGCGGTGGGAGGCTCAGGTGGGGGTTCAGGAGCGGTATAAGTGGGACCGCGGCGGGTCGGACGACAACCCGACCCGGAAGATCCGGGCTGAGGCTAATTGTCCACGTTGTACTAAGGACATGAACCTTGTTTTCTCTAATCGCCATTTTCCCACCCCACAAAGTGAGTCTAATTCTGAATTGGATGGCGAGGGAGAGAGAGAAAAGGGTTACCAAGCGGTTAACCTTTGCCCGAGTTGCAAAACTGCTTATTACTTTCGCCCTTATGACACTACACCTTTGCAAGGTACTTTCGTGGAGATTGGTAGGGTCAGTAGCACTAACAATAATGGTCTTAATAATGTAAGTGGTAAGGGACATTCTCCTAGGAGGATCACACATGGGAAAGGTGGTGGCAAAGAAGGTAGTAGTAGTACTAGTAGGGGTATTCATGGAGGAGAGGAGTCTGGCCCTAAGAGTAATAGTAACGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGTCATACAATGGTGGTGGTGGTGGTAATGGTAATAATGGGGAGCCACCTGAGTCGTGGCCTGGTGTTAATGGGAATGAGAATGGGTTGGCTGTGCATACTCCTCCAGGGCCGCCTTTTGCACCTGGGATTAATGTTATCCGGGCTACGGGGCCGCGGAATGGTGGTTCAGGTGGTGGTGGAGGCAATGGTGAGAAGACTGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCCTCACCGAAAGAGATATGTAAGGGTCTTGACAAGTTTGTTATTGGCCAAGAGAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAACTGTAGATTCAGAAGTATTAGATGATGACGATAATGTGGATCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGTTCAGGGAAGACATTACTTGCCAAAACACTGGCTCGATTTGTGAATGTGCCTTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCGATATTGTACAAACTACTAGCGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCTGAGAGCTTAAATATCAGCAGGGATGTTTCTGGTGAGGGTGTTCAACAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCCAGGAAGCATCCAAGGGGGGATAACATTCAGATGGACACAAAAAATATCCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAAAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAACTGGTGGAATAACAGATTCTGTAGTAACATCATCTTTACTTGAGTCCGTGGAAAGTGCTGATCTTATTGCATTTGGCCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCAGCTTGTCTGCTTTAACTGAAGACCAACTTATGATGGTCCTCACTGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTAGCATGAATAATGTCAAGTTACACTTTACAGAGAAAGCTCTAAGGCTGATAGCAAAGAAAGCAATGTCCAAAAATACTGGTGCTAGAGGTTTAAGATCCCTACTGGAAAGCATTTTAACTGAGGCGATGTTTGAGATTCCTGATATTAAGACAGGAAGTGATCGAATTGATGCAGTTGTTGTTGATGAAGAGTCAGTAGGATCACTAACTTCCCTCGGATGTGGGGGGAAAATTCTTCGGGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATGAAAGATTCAGCGGTTAATGTTGACGTGGGGGAATCAGACTTAAATGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTAA 2124 0.4454 MSRLFGRWKKAKEMASLSGFLPRGHQRIGLNFCPISTQLNMISGHRRWEAQVGVQERYKWDRGGSDDNPTRKIRAEANCPRCTKDMNLVFSNRHFPTPQSESNSELDGEGEREKGYQAVNLCPSCKTAYYFRPYDTTPLQGTFVEIGRVSSTNNNGLNNVSGKGHSPRRITHGKGGGKEGSSSTSRGIHGGEESGPKSNSNASKWLEVSLWETLMSYNGGGGGNGNNGEPPESWPGVNGNENGLAVHTPPGPPFAPGINVIRATGPRNGGSGGGGGNGEKTAWGGSNLGKDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHATLQKGSTVDSEVLDDDDNVDLEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGITDSVVTSSLLESVESADLIAFGLIPEFIGRFPILVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMSKNTGARGLRSLLESILTEAMFEIPDIKTGSDRIDAVVVDEESVGSLTSLGCGGKILRGDGALEQYLAKMKDSAVNVDVGESDLNEGDLELSSRAMSL* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0889 707 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 43 706 - -
Vra1g0889 707 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 289 653 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Vra1g0889 707 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 43 706 - -
Vra1g0889 707 Pfam AAA domain (Cdc48 subfamily) 352 556 IPR003959 GO:0005524|GO:0016887
Vra1g0889 707 Gene3D - 286 561 IPR027417 -
Vra1g0889 707 Pfam C-terminal, D2-small domain, of ClpB protein 563 632 IPR019489 -
Vra1g0889 707 MobiDBLite consensus disorder prediction 91 112 - -
Vra1g0889 707 Gene3D - 562 660 - -
Vra1g0889 707 MobiDBLite consensus disorder prediction 177 202 - -
Vra1g0889 707 SMART AAA_5 352 560 IPR003593 -
Vra1g0889 707 MobiDBLite consensus disorder prediction 151 202 - -
Vra1g0889 707 MobiDBLite consensus disorder prediction 151 165 - -
Vra1g0889 707 SMART ClpB_D2_small_2 563 656 IPR019489 -
Vra1g0889 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 648 IPR027417 -
Vra1g0889 707 MobiDBLite consensus disorder prediction 217 290 - -
Vra1g0889 707 CDD AAA 353 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0889 Vra-Chr1 10342643 10351758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0889 356 455 Miscellaneous Gene Families AT3G02450 37.624 5.50e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0889 K03544 - gmx:100805340 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0889 1 10342643 10351758 Vra8g1703 8 34202894 34209080 PCT