Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0884 ATGAGAAACTTAGTACTTGTACCACTGATCTTGCTTGTTCTTGCTGGTTTTCCATCCAAGGCAAAAGGGTTTATGCAACCATTTACAGAACGTCCTGATGCACTCTGGGCTGACATGTTGTCTGATCGTTTCCTTGATCCATTTCGTGCGTTAGAGCAAATCCCATTTGGGCTTGGCAAAGATCAGGCATCCATGGCTGTGTCACCTGCACGAGTAGATTGGAAGGAGACACCAGAGGGACATGTTATAATGATAGATGTGCCAGGGTTGAAGAAAAATGAGATAAAGATAGAAGTGGAGGGGAATACAGTGCTGAGAGTGAGTGGAGAAAGGAAGAAGGAGGAGGAGAAGGAAGGGGATCACTGGCATAGAGTGGAGAGATCTTATGGCAAATTCTGGAGGCAGTTCAAGTTACCAGACAATGTAGATTTTGATTCTCTCAAGGCTAGGTTAGAGAATGGAGTGCTTACTCTCACCATGGCCAAGTTGTCACCTGAAAAGACCAAAGCTTCAAGGGTGGTTAACATTGCAGGGGATGATGAGCTCAAGCAAGATCTTTGA 561 0.451 MRNLVLVPLILLVLAGFPSKAKGFMQPFTERPDALWADMLSDRFLDPFRALEQIPFGLGKDQASMAVSPARVDWKETPEGHVIMIDVPGLKKNEIKIEVEGNTVLRVSGERKKEEEKEGDHWHRVERSYGKFWRQFKLPDNVDFDSLKARLENGVLTLTMAKLSPEKTKASRVVNIAGDDELKQDL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0884 186 SUPERFAMILY HSP20-like chaperones 60 173 IPR008978 -
Vra1g0884 186 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 9 181 - -
Vra1g0884 186 CDD ACD_ScHsp26_like 71 162 - -
Vra1g0884 186 ProSiteProfiles CS domain profile. 67 174 IPR007052 -
Vra1g0884 186 Pfam Hsp20/alpha crystallin family 73 176 IPR002068 -
Vra1g0884 186 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 61 179 IPR002068 -
Vra1g0884 186 Gene3D - 24 177 IPR008978 -
Vra1g0884 186 PANTHER 22.0 KDA HEAT SHOCK PROTEIN 9 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0884 Vra-Chr1 10298726 10299892 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0884 K13993 - gmx:547971 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0884 1 10298726 10299892 Vra8g1702 8 34201651 34202565 PCT