Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1472 ATGTCTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTTCAGTTTTTGGAGGAAGAGAAATTCAAAGAATCCGTACACAAGCTTGAGAAAGAATCTGGATTCTTTTTCAATATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGTGAGTGGGAAGAGGTTGAGAAGTATCTATCGGGGTTTACCAAAGTTGATGATAATAGATACTCAATGAAAATATTCTTTGAAATTAGGAAACAGAAATATCTGGAAGCACTTGATCGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGCTGGTGATTTAAAAATGTTCTCCACCTTCAACGAGGATCTCTACAAAGAAATAACACAGTTATTAACACTTAATAATTTCAGGGAGAACGAGCAGCTATCCAAGTACGGTGACACCAAAACTGCTAGAAGCATTATGCTGATAGAGCTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCAACCCTTAAGTCATCAAGATTGAGAACTTTAATCAATCAAAGTCTAAACTGGCAGCACCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATTAAGACTTTATTCACAGATCACACATGTGCACCTCCTAATGGTCCTCTGGCCCCTACACCTGTCAATCTTCCAATTGCTGCTGTTGCAAAGCCCGCTGCCTATACATCTCTTGGAGCTCATGGTCCCTTTCCACCATCTGCTGCTACGGCCAATGCTAATGCTTTAGCTGGTTGGATGGCCAATGCCTCAGCTTCTTCATCTGTCCAAGCAGCTGTTGTCACGGCGTCAACCATACCTGTCCCACAAAATCAAGGGTCTATCTTGAAACGTCCTAGAACACCTCCCGCAACTTCTGCCATGGTTGATTATCAAAATGCTGATCATGAACCACTAATGAAAAGGCTTCGTCCTGGTCATTCTGTAGAGGAGGTTTCTTATCCCTTGGCTCGACAAGCCTCTTGGTCTCTAGATGATCTGCCAAGAACTGTGACTATGACATTGCATCAAGGATCCTCTGTGAAAAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGTTGGTTCAAATAATGGAGAAATTACCCTTTGGGAACTCAGTTTGCGAGAAAAGTTGGTCTCAAAGCCATTCAAAATATGGGACGTGTCTGCGTGCTCATTACCATTTCAGGCTGCTGCAGTGAAGGATGCACCTTTTTCTGTCAGTCGGGTCACATGGAGCCCCGATGGAAGTTTTGTAGGTATTGCTTTTACTAAACATTTGATTCACCTGTATGCTTACACTGGATCAAACGAGCTAACCCAGCGAATAGAGGTTGATGCTCATGTTGGGGGTGTGAATGACTTGGCATTTGCTCATCCAAACAAACAGCTGTGTATTGTGACTTGTGGGGATGATAAGTTGATAAAGGTATGGGATTTAAATGGACGAAAACTGTTCACCTTTGATGGGCACGAGGCACCTGTATATTCCATATGTCCCCATCACAAAGAGAGCATTCAGTTCATATTTTCAACTGCCATTGATGGAAAAATAAAGGCATGGTTATATGACAACATGGGTTCTAGGGTTGACTATGATGCTCCTGGCCACTGGTGCACTACAATGCTTTATAGTGCTGATGGAACTAGGTTATTTTCTTGTGGGACAAGTGAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATCAAGAGAACATACAACGGGTTTAGAAAAAAATCAGCTGGTGTTGTGCAGTTTGACACAACCCAAAACCGCTTTTTGGCTGCTGGTGAAGATGGTCAAGTTAAGTTTTGGGACATGGACAATGTTAATCTTGTTACAAGCACTGATGCCAATGGAGGATTACAGAGCCTTCCACGCTTGAGATTCAACAAGGAAGGAAATATTTTGGCGGTTACTACTGTGGACAATGGATTCAAGATACTTGCTAATGCTTCTGGTCTTAGATCTTTAAGAACTATTGAAACTCCTGGTTTTGAAGCATTGAGGTCACCCCTTGAATCAACTGCAATTAAGGTATCTGGCTCTTCTACTGTTAATGTTAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTTAGACCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGCCGAAGTGTGGAGAAACCACGAACTGTGGAAGATGTAATAGACAGAGGTAATAAACCATGGCAACTATCTGAAATTCTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGAAAGCACTGATTCATCCAGCAAGGTTGTTAGACTTTTATATACAAACTCTGGCGTTGGTATTTTGGCACTTGGTTCAAATGGTACTCAGAAGCTTTGGAAATGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCTACAGCCAATGTTGTTCCACAGCATTGGCAACCCAATAGTGGTCTTCTTATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCGTACGTTTTGTCTGCCTGTGGTGGGAAGGTTTCCCTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCTTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATTGCGATTGGGATGGAGGATTCAACCATTCACATCTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAGAAACGTATCACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCAATACAACTACCTGCAGGAAAGTCACCTGTTGGTGACACACGCGTACAGTTTCATTCTGATCAACTTCGTTTGTTGGTAGTTCACGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGCATGCCCCAATATCACATGCAGCTTATTCCTGCAACAGTCAATTAATTTATGCTACATTTTGTGATGCCAACATTGGTGTGTTTGATGCTGATAGCTTGAGGCTTAGATGTCGTATTGCACCGTCAATATGCTTGTCACCGGCAGCTTTAAGCGGAAATCCATCTTTATATCCTCTTGTGGTCGCCGCTCATCCACTGGAACCTAATCAGTTTGCTGTTGGGTTGACGGATGGATCTGTGAAAGTGATAGAACCAAGTGAATCAGAGGGTAAGTGGGGATCCTCCCCACCTATGGACAATGGAATATTGAATGGTAGGACAGCATCATCATCTACAACAAGCAACCACACTGCTGATCAGCCTCAAAGATGA 3393 0.4265 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILAGDLKMFSTFNEDLYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPPSAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQGSILKRPRTPPATSAMVDYQNADHEPLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVKSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPFSVSRVTWSPDGSFVGIAFTKHLIHLYAYTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLNGRKLFTFDGHEAPVYSICPHHKESIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSEDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQVKFWDMDNVNLVTSTDANGGLQSLPRLRFNKEGNILAVTTVDNGFKILANASGLRSLRTIETPGFEALRSPLESTAIKVSGSSTVNVSPVNCKVERSSPVRPSPILNGVDPMGRSVEKPRTVEDVIDRGNKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSGVGILALGSNGTQKLWKWARNEQNPTGKATANVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVLSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLHAPISHAAYSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGNPSLYPLVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGSSPPMDNGILNGRTASSSTTSNHTADQPQR* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1472 1130 PANTHER PROTEIN, PUTATIVE-RELATED 1 1130 - -
Vra8g1472 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vra8g1472 1130 SMART WD40_4 528 571 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 574 614 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 397 435 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 484 525 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 439 482 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Vra8g1472 1130 SMART WD40_4 335 374 IPR001680 GO:0005515
Vra8g1472 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 491 IPR001680 GO:0005515
Vra8g1472 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Vra8g1472 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 492 949 IPR011047 -
Vra8g1472 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Vra8g1472 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1130 IPR027728 GO:0006355
Vra8g1472 1130 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Vra8g1472 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Vra8g1472 1130 Gene3D - 562 673 IPR015943 GO:0005515
Vra8g1472 1130 MobiDBLite consensus disorder prediction 1107 1130 - -
Vra8g1472 1130 Gene3D - 760 1097 IPR015943 GO:0005515
Vra8g1472 1130 SMART ctlh 34 92 IPR006595 -
Vra8g1472 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Vra8g1472 1130 SUPERFAMILY WD40 repeat-like 329 524 IPR036322 GO:0005515
Vra8g1472 1130 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 909 1098 IPR011044 -
Vra8g1472 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Vra8g1472 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Vra8g1472 1130 MobiDBLite consensus disorder prediction 1092 1130 - -
Vra8g1472 1130 SMART Lish 4 36 IPR006594 GO:0005515
Vra8g1472 1130 Gene3D - 324 561 IPR015943 GO:0005515
Vra8g1472 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1472 Vra-Chr8 31643946 31652581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1472 429 642 Miscellaneous Gene Families AT5G08390 22.831 5.94e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1472 - - gmx:100793575 2142.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1472 8 31643946 31652581 Vra8g1472 8 31643946 31652581 ECH
Vra3g0905 3 9085556 9094713 Vra8g1472 8 31643946 31652581 PCT