Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0905 ATGACTTCTTTGAGCCGAGAATTAGTGTTTCTGATACTCCAATTTTTGGAGGAGGAGAAGTTCAAGGAGTCGGTGCACAGGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAAAAGTACTTAAGAGGGTTTACTAAAGTTGACGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTTGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTTTTCTCCACGTTCAATGAGGAACTATACAAAGAAATCACCCAACTTTTAACTCTAAGTAATTTCAGGGAGAATGAGCAATTGTCCAAGTACGGTGACACCAAAACTGCTCGAGGGATCATGTTGATAGAGCTAAAAAAGCTAATAGAGGCAAATCCTCTTTTCCGTGACAAACTTATCTTCCCTACCCTTAGGTCATCAAGATTGCGGACGTTGATCAATCAAAGTTTAAACTGGCAGCACCAACTTTGCAAAAACCCTAGGCCAAACCCAGATATAAAGACTTTATTCACCGACCACACATGTACACCTCCTAATGGTCCTCTAGCCCCCACTCCTGTCAATCTTCCAATTGCTGCTGTTGCAAAGCCTTCTGCTTATACTTCAATTGGAGCTCATGGTCCCTTTCCCCCTGCCGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCCTCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATGCCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCATCCAAGAACACCAACAACTCCTGGCATGGTTGACTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTATGGAGGAGGTTTCCTATCCTGCCTCTCGACAAGCCTCTTGGTCTTTGGATGATCTACCAAGAACAGTGGCAATGACATTGCATCAAGGATACTCTGTGACAAGCATGGACTTTCATCCTTCACATCAAACCTTTCTTCTCGTTGGTTCTACTAATGGGGAAATTACACTTTGGGAACTGGGGTTGCGAGACAGGTTGGTCACAAAGCCATTCAAGATATGGGATGTCTCAGCGTGCTCATTACCATTTCAGGCAGCTATGGCCAAAGATGCTATGGCCAAAGATGCTTCTATTTCTGTCAGTCGTGTCACATGGAGCCTGGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATTCTTACATTGGATCAAATGAGCTGGTTCAGCGTATGGAGGTTGATGCCCATATTGGAGGTGTTAATGACTTGGCATTTGCTCATCCAAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTGACTGGACGGAGACTATTTAACTTTGAGGGTCATGAGGCACCTGTATATTCTATCTGCCCTCATCACAAGGAGAACATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTGTATGATAATGCGGGCTCTAGGGTTGACTATGATGCCCCAGGCCATTGGTGTACCACGTTGCTCTATAGTGCTGATGGAAGTAGACTGTTTTCCTGTGGGACTAGTAAAGATGGCGAGTCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCTATTAAGAGAACATACAATGGGTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTCTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGAGATGGACAGTACTAATCTTCTAACAAGCACTGATGCAGAGGGTGGATTACAGGCCCTTCCACTCTTGAGATTCAACAAGGAAGGAAGTCTTCTTGCTGTCACCACTGCAGACAATGGATTCAAAATTCTTGCTAATGTAAGTGGCCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCACCCATAGACTCTGCTGCAATCAAGGCATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCTGTCAGGCCTTCTCCAATTCTTAAAGGAGGAGTTGATCCCACAGGTCGAAATGCAGAGAAACCTATAACTGTGGAAGAGGGAATTGATAGAGCTAAACCATGGCAGCTGTCTGAAATTGTTGATCCTGTTCAATGTCAGTCAGTTACCATGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTAGACTTTTGTATACGAACTCTGGTGCTGGTCTATTGGCACTTGGTTCAAATGGTGTTCAGAGGCTATGGAAGTGGGCTCGTAGTGAACAAAATCTCAATGGGAAGGCTACTGCCAGCGTTGTTCCACTGCATTGGCAACCTCACAGTGGTCTTCTTATGACTAATGATGTCTCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTTTGTCTGCCTGTGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCCCCTGCCTCTACCTTTTTGGCTTTCCACCCTCAAGATAATAACATCATAGCCATTGGGATGGAGGATTCAACAATTTACATTTATAATGTTAGAGTCGATGAGGTGAAATCCAAATTGAAGGGTCACCAAAAGCGAATTACTGGTTTTGCCTTTTCAACCTGCCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTCTGTGTATGGAACATTGATACATGGGAGAAAAGAAAATCAGTTCCACTACAACTGCCCACAGGAAAGGCTCCTGTAGGTGATACTCGTGTGCAGTTCCATTTAGACCAAATTCGGTTACTGGTAGCCCACGAGACTCAATTGGCAATTTATGACGCCTCTAAAATGGACCGGATTCGGCAGTGGGTTCCTCAAGATGTTCTGGCTGCTCCCATATCATATGCTGCTTATTCCTGCAATAGTCAGTTAATCTATGCTACATTTTGCGATGGAAATACTGGGGTTTTTGATGCTGACAGCTTGAGACTGAGATGTCGTATAGCACTATCCACATACTTTTCACCTGCGGCTTTAAGTGTGAATCAATCTGTGTATCCTGTTGTTGTTGCGGCTCATCCAGCAGAGGCCAATCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTAATAGAGCCCAGTGAATCGGAAGGTAAATGGGGAACCAGTCCACCTATAGATAATGGAATAGTAAACGGTAGGACGGCATCATCATCTACAACAAGCAACCACACACCAGATCAGGCACAAAGATAA 3405 0.4341 MTSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNMKYFEEKVQAGEWEEVEKYLRGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPIAAVAKPSAYTSIGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVSILKHPRTPTTPGMVDYQNADHEQLMKRLRPAPSMEEVSYPASRQASWSLDDLPRTVAMTLHQGYSVTSMDFHPSHQTFLLVGSTNGEITLWELGLRDRLVTKPFKIWDVSACSLPFQAAMAKDAMAKDASISVSRVTWSLDGNFVGVAFTKHLIHLYSYIGSNELVQRMEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFVFSTAIDGKIKAWLYDNAGSRVDYDAPGHWCTTLLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWEMDSTNLLTSTDAEGGLQALPLLRFNKEGSLLAVTTADNGFKILANVSGLRSLRTVETPGFEALRSPIDSAAIKASGSSAVNVSPVNCKVERSSPVRPSPILKGGVDPTGRNAEKPITVEEGIDRAKPWQLSEIVDPVQCQSVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQRLWKWARSEQNLNGKATASVVPLHWQPHSGLLMTNDVSGVNLDEAVPCIALSKNDSYVLSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIYIYNVRVDEVKSKLKGHQKRITGFAFSTCLNILVSSGADAQLCVWNIDTWEKRKSVPLQLPTGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPAALSVNQSVYPVVVAAHPAEANQFAVGLTDGSVKVIEPSESEGKWGTSPPIDNGIVNGRTASSSTTSNHTPDQAQR* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0905 1134 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1134 IPR027728 GO:0006355
Vra3g0905 1134 Gene3D - 764 1114 IPR015943 GO:0005515
Vra3g0905 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 627 IPR001680 GO:0005515
Vra3g0905 1134 ProSitePatterns Trp-Asp (WD) repeats signature. 935 949 IPR019775 -
Vra3g0905 1134 Pfam WD domain, G-beta repeat 915 948 IPR001680 GO:0005515
Vra3g0905 1134 Pfam WD domain, G-beta repeat 452 486 IPR001680 GO:0005515
Vra3g0905 1134 SUPERFAMILY WD40 repeat-like 328 528 IPR036322 GO:0005515
Vra3g0905 1134 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 916 951 - -
Vra3g0905 1134 PANTHER PROTEIN, PUTATIVE-RELATED 1 1134 - -
Vra3g0905 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 916 957 IPR001680 GO:0005515
Vra3g0905 1134 MobiDBLite consensus disorder prediction 1111 1134 - -
Vra3g0905 1134 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vra3g0905 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 452 487 IPR001680 GO:0005515
Vra3g0905 1134 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 470 953 IPR011047 -
Vra3g0905 1134 SMART WD40_4 866 906 IPR001680 GO:0005515
Vra3g0905 1134 SMART WD40_4 443 486 IPR001680 GO:0005515
Vra3g0905 1134 SMART WD40_4 334 373 IPR001680 GO:0005515
Vra3g0905 1134 SMART WD40_4 909 948 IPR001680 GO:0005515
Vra3g0905 1134 SMART WD40_4 578 618 IPR001680 GO:0005515
Vra3g0905 1134 SMART WD40_4 488 529 IPR001680 GO:0005515
Vra3g0905 1134 SMART WD40_4 532 575 IPR001680 GO:0005515
Vra3g0905 1134 SMART WD40_4 812 863 IPR001680 GO:0005515
Vra3g0905 1134 SMART WD40_4 1004 1040 IPR001680 GO:0005515
Vra3g0905 1134 Gene3D - 320 565 IPR015943 GO:0005515
Vra3g0905 1134 MobiDBLite consensus disorder prediction 1097 1134 - -
Vra3g0905 1134 SMART Lish 4 36 IPR006594 GO:0005515
Vra3g0905 1134 Gene3D - 566 698 IPR015943 GO:0005515
Vra3g0905 1134 SUPERFAMILY Peptidase/esterase 'gauge' domain 889 1129 - -
Vra3g0905 1134 SMART ctlh 34 92 IPR006595 -
Vra3g0905 1134 MobiDBLite consensus disorder prediction 708 730 - -
Vra3g0905 1134 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vra3g0905 1134 ProSitePatterns Trp-Asp (WD) repeats signature. 473 487 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0905 Vra-Chr3 9085556 9094713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0905 451 660 Miscellaneous Gene Families AT5G08390 25.234 3.21e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0905 - - gmx:100808421 2066.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0905 3 9085556 9094713 Vra8g1472 8 31643946 31652581 PCT