Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1431 ATGGCTAACCACACTATGAAGCTGCTCAACTTGCTTCTTCTCTTAGCCACCACCGTCTCATCAGATCCTGACCTTCTTCAAGACCTCTGTGTTGCTGACCTTGCCTCAGGTGTGAAAGTGAACGGATTCAGCTGCAAAGAAGCGTCTAAGGTAAATGCTTCAGATTTCTTCTCCAACATATTAGGAAAAGCAGGATCCACCAACAACACCTTTGGGTCAATAGTGACAGGAGCCAATGTTGAGAAAGTCCCAGGATTGAACACACTTGGTGTGTCTCTGTCAAGAATTGACTATGCCCCAAATGGCATAAACCCTCCTCACACTCACCCTCGTGCCACTGAGATTGTCTTTGTGCTTGAAGGCCAACTAGACGTAGGCTTCATAACCACTTCCAATGTCCTCATATCAAAGACCATTAGCAAGGGTGACATATTTGTCTTTCCAAAAGGCTTACTTCACTTCCAACAGAACAATGCTAACGTCCCTGCTGCTGTCATTTCAGCCTTCAACAGCCAACTTCCAGGAACACAGTCCATTGCTACAACCTTGTTTTCTGCCACACCTTCACTTCCCGACCATGTCTTGACCAAGACCTTCCAGGTTGGTACCGGAGTCGTTCAGAAAATCAAGTCCAGGCTTGCACCTAAGAAGTAA 654 0.4633 MANHTMKLLNLLLLLATTVSSDPDLLQDLCVADLASGVKVNGFSCKEASKVNASDFFSNILGKAGSTNNTFGSIVTGANVEKVPGLNTLGVSLSRIDYAPNGINPPHTHPRATEIVFVLEGQLDVGFITTSNVLISKTISKGDIFVFPKGLLHFQQNNANVPAAVISAFNSQLPGTQSIATTLFSATPSLPDHVLTKTFQVGTGVVQKIKSRLAPKK* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1431 217 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Vra8g1431 217 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Vra8g1431 217 PRINTS Germin signature 170 185 IPR001929 GO:0030145
Vra8g1431 217 PANTHER GERMIN-LIKE PROTEIN 9 215 - -
Vra8g1431 217 CDD cupin_OxOx 22 213 - -
Vra8g1431 217 Pfam Cupin 63 203 IPR006045 -
Vra8g1431 217 Gene3D Jelly Rolls 21 215 IPR014710 -
Vra8g1431 217 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Vra8g1431 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 215 - -
Vra8g1431 217 SUPERFAMILY RmlC-like cupins 22 212 IPR011051 -
Vra8g1431 217 SMART Cupin_1_3 58 207 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1431 Vra-Chr8 31256813 31258905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1431 8 217 Miscellaneous Gene Families AT3G05930 56.398 4.36e-85 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1431 - - gmx:100791828 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0850 3 8631815 8633268 Vra8g1431 8 31256813 31258905 PCT