Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0850 ATGAAGCTCACAGCCTCCCTCCTACTATTCACTTTTGCTTTGGTGTTAACCACCATCACTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCTGATCTTGCCTCAGCTGTTAAAGTGAATGGATTCACCTGCAAAGATGCTGCGAAGGTAAATGCGTCTGATTTCTCCTCAGACATATTAGCGAAAGCAGGTGCGACAAACAACACCTATGGGTCCTTGGTGACTGCAGCCAATGTTCTGAAAATCCCAGGACTGAACACCCTTGGTGTATCTCTGTCACGAGTTGACTATGCTCCAGGTGGGATCAACCCTCCTCACACGCACCCACGTGCCACCGAGATTGTGTTTGTGCTGGAAGGAGAACTCGATGTGGGATTCATAACCACAGGCAATGTGCTCATATCAAAGACCATAAGCAAGGGTGAGATTTTTGTGTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGCAAAGGAACCTGCTTCGGTCCTTGCAGCCTTCAACAGTCAATTACCTGGCACACAGTCCATTGCTCTCACCCTCTTTACAGCCACACCACCTGTTCCAGACCATGTCTTGACCAAGGCCTTCCAGATTGGTACCAAGGAGGTTGAGAAAATCAAGTCCAGGCTTGCACCTTAG 651 0.4823 MKLTASLLLFTFALVLTTITASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNASDFSSDILAKAGATNNTYGSLVTAANVLKIPGLNTLGVSLSRVDYAPGGINPPHTHPRATEIVFVLEGELDVGFITTGNVLISKTISKGEIFVFPKGLVHFQKNNAKEPASVLAAFNSQLPGTQSIALTLFTATPPVPDHVLTKAFQIGTKEVEKIKSRLAP* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0850 216 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Vra3g0850 216 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Vra3g0850 216 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Vra3g0850 216 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Vra3g0850 216 SMART Cupin_1_3 59 208 IPR006045 -
Vra3g0850 216 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 215 - -
Vra3g0850 216 Pfam Cupin 63 207 IPR006045 -
Vra3g0850 216 Gene3D Jelly Rolls 22 215 IPR014710 -
Vra3g0850 216 PANTHER GERMIN-LIKE PROTEIN 9 215 - -
Vra3g0850 216 CDD cupin_OxOx 23 214 - -
Vra3g0850 216 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0850 Vra-Chr3 8631815 8633268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0850 8 216 Miscellaneous Gene Families AT3G05930 56.667 7.37e-83 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0850 - - gmx:100302722 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0850 3 8631815 8633268 Vra3g0850 3 8631815 8633268 ECH
Vra3g0850 3 8631815 8633268 Vra8g1431 8 31256813 31258905 PCT