Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1409 ATGGCCAAGGAAGCTTCTCTGTGCGTCTTGTTTCTCTTCTTCCTCATTATCTCCTGTTCTGGATCTCTGGTGGGTTTTTCCTACCGTGAGAGGGGAGACACTTCAACTTCTGCTAAAACCATATCGTTCCTCCAGCAAAAGAACGTTTCCATGTCTCAGATTCGAATTTTTGTTACAGATCATAGGATTTTGAGCAGTCTCAGCAATTCCATCGTGCCAACTGATTTGTACTTGAATAGAAGTCAAGTTCAAAGTTTAATTACTTCAAAACCCTCCGAACTAAAAGCCCATCTACTTAACTTTCTCCAACATTCACGCATCAAAAGCATCATCGCTAGCTGTGGCAATGAGTGCTTAGCACAAAATGAGATGCCTTTGTTCTCACGTGCTTTGAAATCAATTAGTTCAGTTCTCAGAGAGCTTCATATAGGGAGGGAGGTAAAAGTCTCAGTAGCATTTCCACTTTCATACTTAGAAAAGTTGAACACATCGCATGAAAATAGTATTCGCAGAATTCTTTCATTCATAAGGGAAATGAAATCCTTTGTCATGGTAGAAGACAGCATTGATGGAGAATTAAGCATGGAGAGTCACTTTGATCAGGCTATAATCAAACGAGCCACTCTTGCTGCTTCCATTCTTCCTTGCAAAGATGTTCCTATTGTTTTAACAATGAAGAGCATAGTTGCCTCCACTTCAATGGAATTAGCTCAATTCAGTGAGAGGGTATCCAAATATCTAGAAGCAAAAGCTCATATTACAAAAAGAATAGCTGCATTATATGCAGAGGTTCATAGAACAGAAGATTTAGCAAGTAAAGAACTAAAAAGGGAAGAGGAAGAACTGTTTCCTGTCTCCCGCAGAGAGATGCTAAGTGAATCCCACAAAAGGAGAAGTCTATTAGATGATACAACCAGTCCAACAAACGTAGTTTTCCCCACAAATCCAGCATCATCCACTCCAATAATCACACCCCCAGATACACCAACCATCATCACAGTTCCTGCCACAAATCCTGTCACAATTTCCCCTTCCAATCCTGCTGGAGTGCCTGTCACAGTTCCTTCTACCACACCTGTGACTTTTCCTCCCACAAATCCAGCCAATACACCAGTACCAGTGAGCAATCCGGCTACAACAACTCCTGTAGGGATACCACCCCCAACAACCAACCCTGTGACTTCTCCACCTTCATCAGGAAATGTTCCTGTCACAAATCCCCAACCTCAACCACCTCCTGCAAACACTAATGCTCCAGTCATTCAGGGACAGAGTTGGTGTGTGGCAAAGCAAGGAGCTCCTGAAGCTTCTCTTCAAGCAGCACTAGACTATGCTTGTGGAATGGGTGGGTCAGATTGTTCTCAAATTCAGCAGGGTGGGAATTGTTACAGCCCAGTTACATTGCAGAACCATGCCTCTTTTGCCTTCAACAGCTACTATCAAAAGAATCCAGCTCCAACAAGCTGCGACTTTGGAGGGACTGCCACCTTAGTTAACACAAATCCAAGTTCGGGTTCATGCGTTTTCCTATCCTCATCGTCATCAACAACAGCAACTCCAAAGTCATCACCCCCAACACCACCTACACAATCAAGTCCAACACTACCACCACCAAGTCCAGTAACACCTACATCAATTCCAACAGCACCACCAACAACATCAGTAACAGGCCCATTTGGGTATGGCACCCCACCTTCAGTGTTAAATTCAAGCAACCCCGCGTCAGGTACAATGCCAGATTTTGGATCTGAAAGCCCTCCTGTTGTAAATACAACATCAGCCTCGCATTCTATGAGCTTGAGACCTTCTGCTGGCTACATTCTTCTGATGGTATCATATGTCACTATGAGACTTGCTATGCATCCATAG 1869 0.4366 MAKEASLCVLFLFFLIISCSGSLVGFSYRERGDTSTSAKTISFLQQKNVSMSQIRIFVTDHRILSSLSNSIVPTDLYLNRSQVQSLITSKPSELKAHLLNFLQHSRIKSIIASCGNECLAQNEMPLFSRALKSISSVLRELHIGREVKVSVAFPLSYLEKLNTSHENSIRRILSFIREMKSFVMVEDSIDGELSMESHFDQAIIKRATLAASILPCKDVPIVLTMKSIVASTSMELAQFSERVSKYLEAKAHITKRIAALYAEVHRTEDLASKELKREEEELFPVSRREMLSESHKRRSLLDDTTSPTNVVFPTNPASSTPIITPPDTPTIITVPATNPVTISPSNPAGVPVTVPSTTPVTFPPTNPANTPVPVSNPATTTPVGIPPPTTNPVTSPPSSGNVPVTNPQPQPPPANTNAPVIQGQSWCVAKQGAPEASLQAALDYACGMGGSDCSQIQQGGNCYSPVTLQNHASFAFNSYYQKNPAPTSCDFGGTATLVNTNPSSGSCVFLSSSSSTTATPKSSPPTPPTQSSPTLPPPSPVTPTSIPTAPPTTSVTGPFGYGTPPSVLNSSNPASGTMPDFGSESPPVVNTTSASHSMSLRPSAGYILLMVSYVTMRLAMHP* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1409 622 Gene3D - 420 522 - -
Vra8g1409 622 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 146 586 IPR044965 GO:0004553|GO:0005975
Vra8g1409 622 MobiDBLite consensus disorder prediction 303 318 - -
Vra8g1409 622 SMART X8_cls 425 509 IPR012946 -
Vra8g1409 622 Pfam X8 domain 426 496 IPR012946 -
Vra8g1409 622 MobiDBLite consensus disorder prediction 521 547 - -
Vra8g1409 622 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vra8g1409 622 PRINTS Proline rich extensin signature 313 329 - -
Vra8g1409 622 PRINTS Proline rich extensin signature 352 364 - -
Vra8g1409 622 PRINTS Proline rich extensin signature 366 387 - -
Vra8g1409 622 PRINTS Proline rich extensin signature 396 412 - -
Vra8g1409 622 PRINTS Proline rich extensin signature 511 536 - -
Vra8g1409 622 MobiDBLite consensus disorder prediction 509 597 - -
Vra8g1409 622 Gene3D Glycosidases 24 189 - -
Vra8g1409 622 MobiDBLite consensus disorder prediction 363 415 - -
Vra8g1409 622 MobiDBLite consensus disorder prediction 380 394 - -
Vra8g1409 622 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 146 586 - -
Vra8g1409 622 MobiDBLite consensus disorder prediction 548 597 - -
Vra8g1409 622 MobiDBLite consensus disorder prediction 294 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1409 Vra-Chr8 30971129 30974170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1409 387 509 Glycoside Hydrolase AT2G05790 49.206 4.99e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1409 - - gmx:100781884 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0861 3 8727769 8731037 Vra8g1409 8 30971129 30974170 PCT