Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0861 ATGGCCAAAGAACCTTCTCTGTGCCTCTTCTTCCTCTCTTTTCTCATTCTCCTTTCTTCCGGAACTGCATCTTCACCCTCTGTTGCTGCCTCATTCCTCCACCCAACCAAGATCTTCAAATCTCAGATTCGGTTTTCTGTTTCTGATTACAACATTTTGACCACTCTCACAGGCACCAACCTGTCAGTTGATTTCTTCTTAAACGAAAATTTTGTTTCTTCAAAATCATCTCCAGTTGCATGGATGAAAGTTCATCTTTTGAATATTCTTCCCCAAGTGGACATCCGCACCGTCATTGTTAGATGTGGCAGTGTGTGCTTAGGCCGAGATCAGATGCCTTTGCTCATACCTGTTATGGAATCAATTCATTCGTTTCTCAGCAATCTTCAACTGGGGAGGGAAGTAAAAGTCTCCGTGGCATTTCCGCTTTCGTTCCTAGAGAATTTGAATGCATCATATGAAAATGATCTTCTTAAGATTGTTGCGTTTGTAAAGAAAATAGATTCGTTTATCATGCTAGAAGACGCCAATGATGGGGAATTGGGAACTGTTCGATCTGTTATTGAAAGAACCATACTTACTTCTATTCTTCCTTGCAAAGATGTCCCTGTGGTTTTCACAATCAAGAGCCGTGATATTCGCAGTTCAATGGAATTAACTCAGTTTAGAGGGGCAGTATCCAAATATCTTGGAGCAGGATCTCATTTTACCAATGCGTTGTGTGCAGAAGTACAGACAACCAAAGGTTTTGTACTGGAAGATCTCAAAAGAGAAGAGGGAGAAGGGGTAATTCCTCTGATCCTGAGAGAAAAGCCAAGCAAAGTCCACATCAGAAGAATTCTTCAAGTCACAAACAACTCACCTACCACAGTTTCCTCCACAAATCCAACCCCACCTGCACCAGTCATCTCTCCTCCAGATACACCAACCATCATCACTGTTCCTTCCACCAATCCTGTCACAGTTTCCCCCACTAATCCAGGGGCAACACCTGTGACAGTTCCTTCTACTACACCAGCTTCTCCCTTAGCACCCACAAATCCAGCTAATCCAGGGCCTCAATCAGTTACCAACCCTGCTACCTCATATCCACCCCCATCAGGAAATGGTCCTGTCACAAATGCCCTTCCTCCTCCTCCAAACACAAATGCTCAAGCCACGCCTGGGGGCCAGAGTTGGTGTGTGGCAAAGACTGGAGTTTCAGAAGCTACTCTTCAAACGGCATTGGACTATGCTTGTGGAATGCCAAGTGTAGATTGTTCACAAATACAGCAAGGTGGGAGTTGTTACAATCCAAATTCACTTCAAAACCATGCTTCTTTTGCCTTCAATAGCTACTACCAGAAGAATCCTGCGTCAACAAGCTGTGACTTTGGAGGCGCTGCAACCATAGTTAACACCAATCCAAGTTCGGGTTCTTGCATTTACCCATCTTCTTCAGGGGCAGGCACATCCGGCTCTAGTGGCTCACCTTCAGTTTTAGGATCCCAAAGCCCTCCTGATTTAAATACCTCAAATCCAGCTGGTCTGAGGCCTTCTATTAACTTTATGGTCCTGGTGGTATTATCCTTAGTCAGCATAAGACTCACTATATGA 1596 0.4436 MAKEPSLCLFFLSFLILLSSGTASSPSVAASFLHPTKIFKSQIRFSVSDYNILTTLTGTNLSVDFFLNENFVSSKSSPVAWMKVHLLNILPQVDIRTVIVRCGSVCLGRDQMPLLIPVMESIHSFLSNLQLGREVKVSVAFPLSFLENLNASYENDLLKIVAFVKKIDSFIMLEDANDGELGTVRSVIERTILTSILPCKDVPVVFTIKSRDIRSSMELTQFRGAVSKYLGAGSHFTNALCAEVQTTKGFVLEDLKREEGEGVIPLILREKPSKVHIRRILQVTNNSPTTVSSTNPTPPAPVISPPDTPTIITVPSTNPVTVSPTNPGATPVTVPSTTPASPLAPTNPANPGPQSVTNPATSYPPPSGNGPVTNALPPPPNTNAQATPGGQSWCVAKTGVSEATLQTALDYACGMPSVDCSQIQQGGSCYNPNSLQNHASFAFNSYYQKNPASTSCDFGGAATIVNTNPSSGSCIYPSSSGAGTSGSSGSPSVLGSQSPPDLNTSNPAGLRPSINFMVLVVLSLVSIRLTI* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0861 531 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 127 515 - -
Vra3g0861 531 Gene3D - 389 482 - -
Vra3g0861 531 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 127 515 IPR044965 GO:0004553|GO:0005975
Vra3g0861 531 SMART X8_cls 392 476 IPR012946 -
Vra3g0861 531 MobiDBLite consensus disorder prediction 317 388 - -
Vra3g0861 531 MobiDBLite consensus disorder prediction 317 340 - -
Vra3g0861 531 MobiDBLite consensus disorder prediction 358 384 - -
Vra3g0861 531 MobiDBLite consensus disorder prediction 482 506 - -
Vra3g0861 531 Gene3D Glycosidases 19 174 - -
Vra3g0861 531 Pfam X8 domain 393 463 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0861 Vra-Chr3 8727769 8731037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0861 337 478 Glycoside Hydrolase AT4G26830 42.500 1.34e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0861 - - gmx:100809473 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0861 3 8727769 8731037 Vra8g1409 8 30971129 30974170 PCT