Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1398 ATGGCCCCTGTCATGACCACCATGGAAGCCAACCTCACCAAAGCGGAAGCTAAAACCGCCAAAGGTGCTGACTGTGCCTACGTGACCTTTCTTGCCGGAAATGGTGACTATGTAAAAGGTGTGGTTGGGTTGGCGAAAGGTCTGAGGAAGGTGAAGAGCATGTACCCTCTGGTGGTAGCAGTGCTACCGGACGTTCCCGAAGAGCACCGCAACATTCTCATCAACCAAGGCTGCATTGTTAGAGAGATTGAGCCCGTGTACCCTCCAAAAAACCAAACCCAGTTTGCCATGGCATATTATGTCATCAACTACTCCAAGCTAAGAATTTGGGAGTTCGTGGAATACTCTAAGATGATTTACCTAGACGGTGATATTCAAGTGTTTGACAACATCGACCANTTGTTCGACTTTCCTGATAACTACTTCTATGCGGTGATGGACTGTTTCTGTGAGGCCACCTGGGCCCACACTCCGCAGTATGGGATCGGGTACTGCCAGCAGTGCCCCGACAAGGTTCAGTGGCCCACTAAACTTGGGCCGAAGCCTCCTCTCTATTTCAATGCTGGGATGTTTGTTTACCAGCCCAATCTGGCTACCTACAAGGACCTTCTTCAAACAGTNCAAGTTACCAAGCCCACTTCCTTTGCTGAACAGGATTTTCTGAACATGTACTTCAAGGATAAGTATAGGCCAATTCCTAACGTGTACAATCTTGTGCTGGCCATGTTATGGCGTCACCCTGAGAATGTTGAGCTTGAAAAAGTTAAAGTGGTTCACTACTGTGCTGCGGGATCAAAGCCTTGGAGGTACAGTGGGAAAGAGGAGAATATGCAGAGAGAAGATATAAAGATGTTAGTGAAGAAATGGTGGGATATATACGAGGATGAGACTTTGGATTATAACTATTCACTCACTGAAGCGCTTTTGGAGGGTGGCGAACTCAATTACGTTCCAGCTCCATCTGCTGCTTAA 972 0.4722 MAPVMTTMEANLTKAEAKTAKGADCAYVTFLAGNGDYVKGVVGLAKGLRKVKSMYPLVVAVLPDVPEEHRNILINQGCIVREIEPVYPPKNQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDXLFDFPDNYFYAVMDCFCEATWAHTPQYGIGYCQQCPDKVQWPTKLGPKPPLYFNAGMFVYQPNLATYKDLLQTVQVTKPTSFAEQDFLNMYFKDKYRPIPNVYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYSGKEENMQREDIKMLVKKWWDIYEDETLDYNYSLTEALLEGGELNYVPAPSAA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1398 323 PANTHER GALACTINOL SYNTHASE 2 1 303 IPR030515 GO:0006012|GO:0047216
Vra8g1398 323 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 303 - -
Vra8g1398 323 Pfam Glycosyl transferase family 8 29 270 IPR002495 GO:0016757
Vra8g1398 323 CDD GT8_Glycogenin 25 295 - -
Vra8g1398 323 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 23 301 IPR029044 -
Vra8g1398 323 SUPERFAMILY Nucleotide-diphospho-sugar transferases 27 297 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1398 Vra-Chr8 30871529 30873072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1398 1 323 Glycosyltransferase AT1G56600 73.373 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1398 K18819 - gmx:548050 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0872 3 8839312 8841926 Vra8g1398 8 30871529 30873072 PCT