Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0872 ATGACACCCAACATCACCACCGTCACTGTCAATGGCACCACTGAGCAAACCAAACCTGGTAGTAGCCGTGCCTTTGTGACTTTCCTTGCTGGAAATGGTGATTACATAAAAGGTGTTGTGGGTTTGGCCAAAGGGTTGAGAAAGGCCAAAAGCATGTACCCTTTGGTGGTGGCTGTGTTACCTGATGTTCCTCAGGAACATCGTGTGATTTTGAAATCTCAAGGTTGCACTGTCAGGGAGATCGAACCTGTCTATCCACCTGAGAATCAGACACAGTTCGCCATGGCTTATTATGTCATCAATTATTCCAAGCTACGTATCTGGGAGTTTGTGGAGTACAGCAAGATGATATACCTAGATGGTGACATCCAGGTGTTTAAAAACATTGACCACTTGTTTGATCTTCCTGATAACTATTTCTATGCGGTGATGGATTGTTTCTGCGAGAAGACTTGGAGTCACAGCCCTCAGTACAAGATTGGTTACTGCCAACAGTGCCCTGATAAAGTTCAGTGGCCCTCTCATTTGGGTCCTAAGCCTCCTCTATATTTCAACGCTGGCATGTTTGTCTATGAGCCTAATCTTGTCACTTACAGTGATCTTCTTCGAACTCTTAAAATCACCAAGCCCACTTCTTTTGCTGAGCAGGACTTTCTGAATATGTACTTCAAGGACAAGTACAAGCCTATACCAAACAAGTACAACCTTGTACTGGCCATGTTGTGGCGTCACCCCGAGAATGTTGAACTTGAGAAAGTTCAAGTGGTTCATTATTGTGCTGCTGGGTCTAAGCCTTGGAGATTCACTGGGAAGGAGGAGAACATGGAGAGGGAAGATATCAAGATACTTGTGAAGAAGTGGTGGGAGATATATGAAGATGAGACACTAGACTACAATAACGACAACTCTGTCAATCTGCAACCTTTCTCTTCACCACTGTCGGAGCCTGATGTCATTCCACTCGTTTCGGCACCTTCTGCTGCATAA 987 0.4478 MTPNITTVTVNGTTEQTKPGSSRAFVTFLAGNGDYIKGVVGLAKGLRKAKSMYPLVVAVLPDVPQEHRVILKSQGCTVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFKNIDHLFDLPDNYFYAVMDCFCEKTWSHSPQYKIGYCQQCPDKVQWPSHLGPKPPLYFNAGMFVYEPNLVTYSDLLRTLKITKPTSFAEQDFLNMYFKDKYKPIPNKYNLVLAMLWRHPENVELEKVQVVHYCAAGSKPWRFTGKEENMEREDIKILVKKWWEIYEDETLDYNNDNSVNLQPFSSPLSEPDVIPLVSAPSAA* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0872 328 Pfam Glycosyl transferase family 8 27 268 IPR002495 GO:0016757
Vra3g0872 328 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 328 - -
Vra3g0872 328 SUPERFAMILY Nucleotide-diphospho-sugar transferases 26 295 IPR029044 -
Vra3g0872 328 PANTHER GALACTINOL SYNTHASE 2 1 328 - -
Vra3g0872 328 CDD GT8_Glycogenin 23 293 - -
Vra3g0872 328 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 21 297 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0872 Vra-Chr3 8839312 8841926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0872 1 328 Glycosyltransferase AT1G56600 74.926 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0872 K18819 - gmx:100800249 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0872 3 8839312 8841926 Vra8g1398 8 30871529 30873072 PCT