Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1383 ATGGTCCCTTTCTCCAAGAATGGAATCAATCACCAATTTAATCAGGGCTGTTGTGGAGGGCTGCATTTCGGAGATGTTCTGTGTTTGGACCTTGTGAAAATGAATTGGAGCAAGCTTGGGACCACGGGTGAAAAGCCAGGTCCTAGAGATAGCCATGGTGCTGTTCTTGTAGGGCATAAAATGATAGTTTTCGGTGGCACCAATGGGTTAAAGAAGGTGAATGACACTCATATATTGGACCTTGTTACCAAAGAGTGGATTCGTCCTAAATGTGAAGGGACTCCTCCTTCACCAAGGGAAAGTCACACTGCTACTCTAGTTGGTGATGAAAGAGTAGTGATTTTTGGTGGCAGTGGTGAAGGTGACGGAAACTATTTAAATGATTTGCATGTTCTAGACCTTCGAACCATGAGGTGGACTTCTCCTCAGGTAAAAGGCGATTTGCCTGTCCCTAGGGACAGTCACAGCACTCTTGCAATCGGGAACAGGCTTTTTGTGTATGGTGGAGACTGTGGTGATCAGTATCAGGGCGATGTTAATGTGCTTGACATGGACACGATGACTTGGTCAAGGTTGAAAATTCAAGGATCTTCTCCAGGAGTCAGGGCAGGTCATGCTGCTGTGAGCATTGGTACAAAGGTCTACATCATTGGAGGGGTGGGAGATAAACGTTATTACAACGACATATGGGTGTTTGACATCTGCACCTGTTCGTGGGCTCAGCTTGATTTTCGTGGTCAACCGCCACAGGGGCGATTTTCTCACACAGCTGTTGTGGCAGACATGGATATTGCCATATATGGCGGGTGTGGGGAAGACGAACGTCCTTTGAACGAGTTGCTAGTGTTGCATCTTGGAGCAGAGCATCCGAATGGACGTTACAACATTTCCATGTGCAAAGTTTTTGGAACTTATTGGAATCAAGAAAAGAGGATCATGCCTAGAGGAACTGATACCAACTCGACAACTCCATGGCCGGAAAACCATATGGAAGCCATAGGAAAATGGGCTAATGAAATTGTGTTGGATAGAGTACAACCTTGTAACATCGATTCAGGCAGTTCACAACACAAGAGGAAGAGAATCGGTGTGGCAAAGGCGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTGTCCCAGCATTCATCTCCTTCTCAATCTGATCAAGAACAGACTCCAGCTCAAAAAGCAAATGTTTCCATCATGGATTCTCAGAGGTATCAATGGTTCAAACAGATGAATAAAAGTCCAAGCTATTGCCAGCTCGACAATGACTCAAGTAACACCACATTTTTTAAGAATCTCACACAGAGAAGTGTCCCTCCCATGAAACATCAACCAAAACAAGAGCAGTATGTTCACATTGATGATGATAGAAAAGTACCTCGACACACTCAACACCTGATCGGTGCTGAAGTTCGGGGAAAAGTTGATGGAGCCTTTGATTCAGGTTTACTCATGACTGCAGTAGTTAATGGAAGAGTTTTCAGAGGAGTCTTATTTGCACCAGATTCGCAGCAAGTAACAGAGCCATGCCATGGCTTCAGGCAACCTGTGGTAGCTCAAGCATCATCAGCAATGATGAGAGGCCCAACTTCTGCATCTTTAGCCAAAGAGCATGAAATGAGGAGCGACCTTCAAGGCTTGGTTTTGACTCTTGGAGGGCCTGCAAGTGCTAACCATGCTTCATCCTAG 1704 0.4525 MVPFSKNGINHQFNQGCCGGLHFGDVLCLDLVKMNWSKLGTTGEKPGPRDSHGAVLVGHKMIVFGGTNGLKKVNDTHILDLVTKEWIRPKCEGTPPSPRESHTATLVGDERVVIFGGSGEGDGNYLNDLHVLDLRTMRWTSPQVKGDLPVPRDSHSTLAIGNRLFVYGGDCGDQYQGDVNVLDMDTMTWSRLKIQGSSPGVRAGHAAVSIGTKVYIIGGVGDKRYYNDIWVFDICTCSWAQLDFRGQPPQGRFSHTAVVADMDIAIYGGCGEDERPLNELLVLHLGAEHPNGRYNISMCKVFGTYWNQEKRIMPRGTDTNSTTPWPENHMEAIGKWANEIVLDRVQPCNIDSGSSQHKRKRIGVAKAWDVESEQEEHSLSLSQHSSPSQSDQEQTPAQKANVSIMDSQRYQWFKQMNKSPSYCQLDNDSSNTTFFKNLTQRSVPPMKHQPKQEQYVHIDDDRKVPRHTQHLIGAEVRGKVDGAFDSGLLMTAVVNGRVFRGVLFAPDSQQVTEPCHGFRQPVVAQASSAMMRGPTSASLAKEHEMRSDLQGLVLTLGGPASANHASS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1383 567 Gene3D - 13 91 IPR015915 GO:0005515
Vra8g1383 567 Pfam Galactose oxidase, central domain 202 250 - -
Vra8g1383 567 Pfam Kelch motif 48 87 IPR006652 GO:0005515
Vra8g1383 567 Pfam Galactose oxidase, central domain 110 160 - -
Vra8g1383 567 PANTHER OS01G0300900 PROTEIN 509 563 - -
Vra8g1383 567 PANTHER OS01G0300900 PROTEIN 15 509 - -
Vra8g1383 567 MobiDBLite consensus disorder prediction 379 401 - -
Vra8g1383 567 Gene3D - 92 331 IPR015915 GO:0005515
Vra8g1383 567 PANTHER KELCH REPEAT DOMAIN 15 509 - -
Vra8g1383 567 PANTHER KELCH REPEAT DOMAIN 509 563 - -
Vra8g1383 567 SUPERFAMILY Kelch motif 18 286 IPR015915 GO:0005515
Vra8g1383 567 MobiDBLite consensus disorder prediction 373 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1383 Vra-Chr8 30688454 30694413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1383 16 384 Acyl Lipid Metabolism Gene Families AT3G05420 30.591 8.93e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1383 K20285 - gmx:100787222 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0885 3 8927607 8931962 Vra8g1383 8 30688454 30694413 PCT