Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0885 ATGAGTTCTTCGGCACCTCAAGTTTCCAACAACAAAACAATGTGGCTGCATCCAAAGGTTTTGGGTTTCAATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCCAAGGGCCTCATGTATGTCTTTGGGGGTTGCTGTGGGGGGCTGCATTTTTGCGATGTTCTCACTCTGGACCTTACCAAACTGGTTTGGAGCAAGCTTACTACTACCGGTGAGAAGCCGGGGCCGAGAGATAGTCACAGTGCTGTTCTTGTGGGGCATAAAATGATAGTGTTTGGTGGCACGAATGGGTTCAAGAAGGTGAATCACATTCACATACTTGATCTTGTTACCAAAGAGTGGTTTCGACCTGAATGTAAAGGGACTCCTCCTTCTCCACGTGAAAGCCATACTGCCACGCTGGTTGGTGATGAAAGGATAGTGATATTTGGCGGTAGTGGAGAAGGTCATGCTAACTATTTAAATGATTTGCACATTCTTGATCTTCGAACCATGAGTTGGACTTCCCCTGAGTTGAAAGGTGATTTGCCGGTCCCCAGAGACAGTCATAGTACCCTTGCAATCGGGAACAAACTTATTGTTTATGGTGGAGATTCTGGTGATCAGTATCATGGCAATGTTCATATGCTTGATATGGCTACAATGACTTGGTCTAGATTGACGATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGTCATGCTGCAGTTAACATTGGAACAAAGGTATATATCATTGGAGGAGTTGGAGATAAACGTTACTATAACGACGTTTGGATCTTTGATACTTGCAATTTTTTGTGGACTCAACTCGATATACATTTTCAACAGCCACAAGGGCGATTTTCTCATACAGCTGTTGCTGCAGGCATGAATATTGCAATATATGGCGGATGTGGGGAAGATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGCTTGCAGCAGAGTATCCAAATGGACGTTACTACGTTCCCATGAGCAAACCTATTGGAACTTATTGGAATCACGAAAAGAATATTATCCCAGCAGAAGCGGATACTACTAACTCGCAGGAAACTATCCTCGTGAGGAATGACGTGGAAGCTTTTGGAAATGGAGCTTATGAAATTGCATCAGAAAAATCGTCGCCTTATCACTTTGATTCAGGTACTTCACGACAGAAGAGGAGGAGAATTGCTGCTGCAAAGGTATGGGATGTTGAATCAGAACAAGAAGATAGTTTTCTTTCATTGTCTCTTCATTCATCTCCATATAAATCGGATCAAGAACAGACCCCAAGTCAAGAAGCAAATGCATTCTTTCCAACCACTTCCCAACACGAAAATGACTCAAATTATAAGAGAACATTGATGAATGTCCCACTTAAGACTCCACAGGCTTTTCATTTCCTACAACATCAAATAAAACAGGAACAATGTCTTCATGTTAACGAGGACAAAAAAAGAGCTCAACGTCAGGCTGCAGAGCAGAAACCAATGCTGCGACCCATTCAACACCTGATTGGTGGTGAAGTTCGGGAGAGAGTTGAAGGACCCTTTGACCCAGTTTCGGTATCTCCTACAGTTGTGAATGGAAGGATTTTCCGGGGAGTCATATTTGCACCTGGAGCAGGAGTTGTCTCAAAAGGGGCGAGTGTTAAACCGAATTGTCCTTCCTCTCAAGCCTTTTTGGGTACTTTAAGGGCTTCCCAGGAAGCACCATACCATGGTTCACGATCAAGGCAAACCCCAGTGGCTTTACCATTTCCAATCATGGGAGCGACTCCCAGTGTTGTTTCCAAGGAGCATAAAATCAGGAGTGATCTTCAAGGATTGGCTCTAACACTTGGAGGACCAGGCAGTGGAAATCCTGAGGTAAAATATTGA 1869 0.4414 MSSSAPQVSNNKTMWLHPKVLGFNPSERWGHSACFSKGLMYVFGGCCGGLHFCDVLTLDLTKLVWSKLTTTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNHIHILDLVTKEWFRPECKGTPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGDLPVPRDSHSTLAIGNKLIVYGGDSGDQYHGNVHMLDMATMTWSRLTIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDTCNFLWTQLDIHFQQPQGRFSHTAVAAGMNIAIYGGCGEDERPLNELLVLQLAAEYPNGRYYVPMSKPIGTYWNHEKNIIPAEADTTNSQETILVRNDVEAFGNGAYEIASEKSSPYHFDSGTSRQKRRRIAAAKVWDVESEQEDSFLSLSLHSSPYKSDQEQTPSQEANAFFPTTSQHENDSNYKRTLMNVPLKTPQAFHFLQHQIKQEQCLHVNEDKKRAQRQAAEQKPMLRPIQHLIGGEVRERVEGPFDPVSVSPTVVNGRIFRGVIFAPGAGVVSKGASVKPNCPSSQAFLGTLRASQEAPYHGSRSRQTPVALPFPIMGATPSVVSKEHKIRSDLQGLALTLGGPGSGNPEVKY* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0885 622 SUPERFAMILY Kelch motif 20 271 IPR015915 GO:0005515
Vra3g0885 622 PANTHER KELCH REPEAT DOMAIN 1 616 - -
Vra3g0885 622 PANTHER OS01G0300900 PROTEIN 1 616 - -
Vra3g0885 622 Gene3D - 120 350 IPR015915 GO:0005515
Vra3g0885 622 Pfam Kelch motif 231 271 IPR006652 GO:0005515
Vra3g0885 622 Pfam Galactose oxidase, central domain 139 189 - -
Vra3g0885 622 Pfam Galactose oxidase, central domain 39 85 - -
Vra3g0885 622 Pfam Galactose oxidase, central domain 87 135 - -
Vra3g0885 622 Gene3D - 9 119 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0885 Vra-Chr3 8927607 8931962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0885 15 413 Acyl Lipid Metabolism Gene Families AT3G05420 29.496 1.44e-38 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0885 K20285 - gmx:100814299 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0885 3 8927607 8931962 Vra8g1383 8 30688454 30694413 PCT