Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1322 ATGCCAACTTTCTGCAACCAAAATAATACACAGACACACATATATTTCTTCGATATACCAATGGTTGCTCCTTCTCCAACTTCCATGATGGTAAGAACCAAGAAAACAAAGGCTGTGGGAGTTCCCACGATCGACCTTTCGTTGGAAAGGTCGAAGCTGTCGGAAACAGTGGTGAAAGCATGTGAAGAATATGGTTTCTTCAAGGTGGTGAACCACAGTGTGGCAAAGGAGGTGATTTCAAGGTTGGAAGAGGAGGGAACGGCGTTTTTCTCCAAAACCTCCTCCGAGAAGCGCCAAGCTGGCCCTGCCACCCCTTTCGGATATGGCTGCAGAAATATTGGCCCCAATGGCGATATGGGTCACCTCGAGTATCTTCTCCTTCATACCAATCCTCTTTCCGTATCTGAGAGATCCCAAACCATAGCCACCGACCCTACCAAGTTCAGTTGCGCCGTAAATGATTATATAGAAGCAGCTAAAGGACTAACATGTGAGATTCTTGATCTTGTGGCGGAGGGTCTGTGGGTCCAAGACCACTTCTCACTCAGCAATCTCATCAAAGACGTCCACAGTGACTCACTCCTCAGGATCAATCAGTACCCTCCCGTGAGCCTAAAGGGCAACAACAACAGTGACACCTCCAAACTCGACCAAAATAATAATAATAATAATAATAATAATAATAACATTGGATTTGGAGAGCATTCTGACCCTCAGATCTTGACCATCATGCGATCCAACAACGTGGACGGCCTTCAGATTTCCACCCACGATGGCTTGTGGATCCCTGTCCCCCCTGACCCTAATCAGTTCTTCGTTATGGTTGGTGATGCCCTGCAGGTTTTGACAAATGGAAGGTTTAGAAGCGTGAGACACAGAGTATTGACCAACGCAACCAAGGCCAGAATGTCGATCATGTACTTTGCCGCACCACCGCTCAATTGGTGGATCACTCCACTGCCCAAGATGGTCACACCCCTCAGTCCAACTCTCTATAAGCCCTTCACCTGGGCCCAATACAAACAAGCAGCTTACTCTCTACGATTAGGAGACACTCGCCTTGATCTCTTCAAGATCCAACGACAACAAGATACCCATCTCGCATCTGCTTCTCCCTCACATTTACATCGCATTCCTTCTGCATATTCTTCCACCACCTAA 1161 0.472 MPTFCNQNNTQTHIYFFDIPMVAPSPTSMMVRTKKTKAVGVPTIDLSLERSKLSETVVKACEEYGFFKVVNHSVAKEVISRLEEEGTAFFSKTSSEKRQAGPATPFGYGCRNIGPNGDMGHLEYLLLHTNPLSVSERSQTIATDPTKFSCAVNDYIEAAKGLTCEILDLVAEGLWVQDHFSLSNLIKDVHSDSLLRINQYPPVSLKGNNNSDTSKLDQNNNNNNNNNNNIGFGEHSDPQILTIMRSNNVDGLQISTHDGLWIPVPPDPNQFFVMVGDALQVLTNGRFRSVRHRVLTNATKARMSIMYFAAPPLNWWITPLPKMVTPLSPTLYKPFTWAQYKQAAYSLRLGDTRLDLFKIQRQQDTHLASASPSHLHRIPSAYSSTT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1322 386 Pfam 2OG-Fe(II) oxygenase superfamily 193 310 IPR044861 -
Vra8g1322 386 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 105 IPR026992 -
Vra8g1322 386 Gene3D - 4 348 IPR027443 -
Vra8g1322 386 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 190 319 IPR005123 -
Vra8g1322 386 MobiDBLite consensus disorder prediction 205 232 - -
Vra8g1322 386 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 24 360 - -
Vra8g1322 386 PRINTS Isopenicillin N synthase signature 57 74 - -
Vra8g1322 386 PRINTS Isopenicillin N synthase signature 235 256 - -
Vra8g1322 386 PRINTS Isopenicillin N synthase signature 271 297 - -
Vra8g1322 386 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 24 360 - -
Vra8g1322 386 SUPERFAMILY Clavaminate synthase-like 22 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1322 Vra-Chr8 29232788 29236612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1322 18 359 Glycosyltransferase AT5G59530 25.753 2.82e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1322 K04125 - gmx:100809097 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0791 3 8091922 8095634 Vra8g1322 8 29232788 29236612 PCT