Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0791 ATGGTTGTGCCTTCTCCAACATCCAGCAAGATAACTTCCAATAAAACAAGGGCAATGGGAATCCCGACCATTGACCTATCCATGGAAAGGTCACAGTTATCGCAAACTGTGGTGAAAGCCTGCGAGGAATACGGTTTCTTCAGAGTGGTTAACCACAACGTGCCGAAGGAGGTTATTGCAAGATTGGAAGAGGAAGGTGCAGAGTTTTTCTCAAAACCCAGTCACGAGAAGCGTCGGGCTGGGCCCGCAAGCCCGTTCGGTTACGGCTTCACCAACATTGGGCCCAATGGAGATATAGGTGACCTGGAGTATCTTCTGCTTCATGCTAACCCTCTCTCCATCGCTCAGATATCCAAAACCATCGCTAACGACTCCACCAAGTTCAGTACGGTTGTGAAGGAATATGTGGAAGTAGTGAAAGAAGTAACGTGCGAGATTCTAGATCTGGTGGTTGAGGGGTTGGGGGTTGCAGACAAGTCCGGTCTTAGCCGTCTGATCAGAGATTTTGATAGTGATTCTGTTCTGAGGATGAATCACTACCCTCCATTGAAGGTGAAGTGGAAGGGTAACAAGAATAGCATTGGTTTTGGAGCTCATTCTGACCCTCAGATGTTGACCATCATGCGCTCCAACGATGTGGGTGGCCTTCAAATTTACACCCGTGAGGGCCTATGGCTTCCTGTTCCTCCTGATCCAACTAATTTCTTTGTCATGGTTGGCGATGTTTTGCAGGTTATGACAAATGGAAAGTTCATGAGCGTGAGACACAGGGCATTGACGAACACATCGGAGGCAAGGATGTCAATGATATACTTTGCAGCACCGCCACTTGATTGGTGGATAGCTCCTCTGCCGGAGATGGTGTCACCGCCGGAAAATGAGAGTGTGTATAAGGCCTTCACATGGGCCCAGTACAAGGAAGCAACATATTCTTTACGCCTTGGAGATTCACGGCTTGATCTCTTCAGGGCCCAGATAGATACCCATCTTCTCTCTTCCTCTCAATCTCAGTTTCAATGTTAA 1023 0.48 MVVPSPTSSKITSNKTRAMGIPTIDLSMERSQLSQTVVKACEEYGFFRVVNHNVPKEVIARLEEEGAEFFSKPSHEKRRAGPASPFGYGFTNIGPNGDIGDLEYLLLHANPLSIAQISKTIANDSTKFSTVVKEYVEVVKEVTCEILDLVVEGLGVADKSGLSRLIRDFDSDSVLRMNHYPPLKVKWKGNKNSIGFGAHSDPQMLTIMRSNDVGGLQIYTREGLWLPVPPDPTNFFVMVGDVLQVMTNGKFMSVRHRALTNTSEARMSMIYFAAPPLDWWIAPLPEMVSPPENESVYKAFTWAQYKEATYSLRLGDSRLDLFRAQIDTHLLSSSQSQFQC* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0791 340 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 275 IPR005123 -
Vra3g0791 340 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 94 IPR026992 -
Vra3g0791 340 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 4 325 - -
Vra3g0791 340 SUPERFAMILY Clavaminate synthase-like 6 316 - -
Vra3g0791 340 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 325 - -
Vra3g0791 340 Pfam 2OG-Fe(II) oxygenase superfamily 172 274 IPR044861 -
Vra3g0791 340 Gene3D - 2 313 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0791 Vra-Chr3 8091922 8095634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0791 19 323 Glycosyltransferase AT5G59530 27.607 1.35e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0791 K04125 - gmx:100777233 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0791 3 8091922 8095634 Vra3g0791 3 8091922 8095634 ECH
Vra3g0791 3 8091922 8095634 Vra8g1322 8 29232788 29236612 PCT