Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1309 ATGAATCACGGCCGTCTGATTTCTGGTGGAGGATGGCTACTCCGGAGACTTTGCACGGCGGCTGAGAGTCCAGCAAAAAGTCCAAACCTCTATCGAATATTATCGGCGTTGAAAAAGACTGGAGGAAGCGTGTCGGAAACTTTGGACAACCATGTAATGCAAGGCAAATCCATAGAAAAAACAGAACTCGAAAGATGTGTCGAGGAACTCCGTAGGTATCGCAGATTTCAGCATGCACTCGAGGTAATTGAATGGATGGAGATGAGGAAAATTAACTTTTCCTGGCATAATTATGCAGTGCAATTAGATCTTGTGTCCAAGACCAAAGGGGTGGTTGCGGCTGAAGAGTTTTTCAGTGGTCTTCCAACTCCGGCCAAGAACAAGAATACGTATGGTGCTCTCTTGAATTGTTACTGCAAGGAACTAATGAAAGACAAGGCATTGAGTCATTTTGACAAAATGGATGAATTGGGTTATGTCTCTTCTCAGGCTTTCAACACTTTGATGGGTCTGTATATGAGAAGTGGTGAACCCCAGAAAGTGCTTGACCTGGTGGAGCTAATGAAAAGGAGAAGCATTCCCTTGTCTACATTCACGTATCATGTCTGGATGAACGCATGTGCCTCTTTGGGCGATCTTGATGGGGTGGAGAGAGTCTATGAGGAGATGAAAACTGAATATCGAATTGGTTGGGAGACTTACAGCAACCTTGCTGCTATTTATGTGAAGGTTAAGGACTTTGAGAAGGCTGAAATGATGCTTAAGGAGCTGGAGAAACGGGTGAAGCCTAGGCAGCGTGATGCTTACCATTTCTTGCTTGGCCACTACGCTGCGACAGGTAATCTGGGAAAAGTTCAGAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTGACCAATTTTAGCTATATGGTTATGCTTAGTACCCTCCGAAGGCTTAATGATATAGAGGGCTTAACAAAATGCTTTAAGGAGTGGGAAGCTAGTTGTGTTAGCTATGATGGTTGGTTTCAGGGTTGGTTTCAGGGTTACTTTCAGGGTTGGTTTCATCTCTGCCAAATTCTCCCGACCTCCACGAAGACTTCCCAGAATAATCGCTTCTCACACCTCCTGTGCGAACTCGACGCCACTGTCATCGACTATCCAAAGCATTACGAGTTGCGTTATGTGCACTATGTGGCTCGGAGGAACATTAGCACGGAGTGGTCGCTACTAGAGAGGGCGTTGTCTCCAGACTGTGTGATACTCAGAGGGTTTTCTAGGTTTGACGGGGGAATGGGTGCAAGCGGTTGTTTAGGATTTTTGGGAGGAATTTTCTTAGTAAAGGTTGGCTTTCCCCGTGGATGA 1347 0.4588 MNHGRLISGGGWLLRRLCTAAESPAKSPNLYRILSALKKTGGSVSETLDNHVMQGKSIEKTELERCVEELRRYRRFQHALEVIEWMEMRKINFSWHNYAVQLDLVSKTKGVVAAEEFFSGLPTPAKNKNTYGALLNCYCKELMKDKALSHFDKMDELGYVSSQAFNTLMGLYMRSGEPQKVLDLVELMKRRSIPLSTFTYHVWMNACASLGDLDGVERVYEEMKTEYRIGWETYSNLAAIYVKVKDFEKAEMMLKELEKRVKPRQRDAYHFLLGHYAATGNLGKVQRVWNSLKSVSPVTNFSYMVMLSTLRRLNDIEGLTKCFKEWEASCVSYDGWFQGWFQGYFQGWFHLCQILPTSTKTSQNNRFSHLLCELDATVIDYPKHYELRYVHYVARRNISTEWSLLERALSPDCVILRGFSRFDGGMGASGCLGFLGGIFLVKVGFPRG* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1309 448 PANTHER OS01G0301500 PROTEIN 4 335 - -
Vra8g1309 448 SUPERFAMILY TPR-like 196 297 IPR011990 GO:0005515
Vra8g1309 448 Gene3D Tetratricopeptide repeat domain 59 228 IPR011990 GO:0005515
Vra8g1309 448 Gene3D Tetratricopeptide repeat domain 229 348 IPR011990 GO:0005515
Vra8g1309 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Vra8g1309 448 TIGRFAM PPR: pentatricopeptide repeat domain 198 225 IPR002885 -
Vra8g1309 448 TIGRFAM PPR: pentatricopeptide repeat domain 130 160 IPR002885 -
Vra8g1309 448 TIGRFAM PPR: pentatricopeptide repeat domain 164 196 IPR002885 -
Vra8g1309 448 PANTHER OS12G0527900 PROTEIN 4 335 - -
Vra8g1309 448 Pfam PPR repeat 130 158 IPR002885 -
Vra8g1309 448 Pfam PPR repeat 233 260 IPR002885 -
Vra8g1309 448 Pfam PPR repeat family 164 208 IPR002885 -
Vra8g1309 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1309 Vra-Chr8 29002476 29004871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1309 30 334 EF-hand Containing Proteins AT1G02150 38.264 2.67e-66 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1309 - - var:108325918 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1309 8 29002476 29004871 Vra3g0574 3 6328378 6329914 PCT