Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1284 ATGATGTTCCCTTACATATATATATATACATATAAACATTGTTCCACCCCTCCCATAACTTCTCAAGCCACCACGCCTTTCACTTTCGCTTTCCCTATAATGGCTTCAATCTTTTCACCTCTCACCACTATCTTCTTCTTCTTCATAGTGCTCTGGGGTGGTGAGGCTCGTGACCCTTTTGCGTGTGACCCAAAGAACGCCGCCACAAGGGGCTTACCCTTTTGCAAGACGTCGCTGACTATAGCAGAAAGGGTGAAGGACCTGATTGGAAGGTTGACAGTGGAAGAAAAAGTGAGCTTGCTGGTGAACAATGCGGCGGCAGTTTCTCGGCTTGGAATCAAAGGCTATGAGTGGTGGTCGGAGGCACTGCATGGGGTCTCAAATGTGGGCCCCGGAACCAAGTTTGGCGGCCAGTTTCCCGCCGCCACCAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAACGCTTCTTTGTGGGAAGCTATTGGACAGGTGGCCTCCGACGAAGCAAGAGCAATGTACAACGGAGGAACGGGTGGGCTTACGTACTGGAGCCCAAACGTGAATATATTTAGAGACCCAAGGTGGGGCCGGGGACAGGAGACTCCCGGTGAAGACCCATTAGTAGCCGGTAAGTATGCGGCCAGTTACGTGAGGGGATTACAGGGGAGCGACGGTAACCGGTTGAAGGTGGCTGCCTGTTGCAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGTGTAGATCGATTTCACTTCAATGCAGAGGTTAGCAAGCAGGATATGGAGGAGACGTTCAACGTGCCATTCAGGATGTGCGTTAAGGAAGGAAACGTGGCGAGTGTGATGTGTTCTTACAATAAGGTTAACGGTGTTCCCACCTGTGCCGACCCCGTTCTCCTAAACACTACCGTAAGAGGCCTCTGGGGTCTTAATGGCTACATCGTATCAGACTGTGACTCTGTCGGGGTCTTCTACAATACCCAACATTACACGTCAACGCCGGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTTCTAGCTCAGCACACCAACAATGCCGTCAAAAAAGGCCTGTTAAGTGAAGCTGATGTTAATGGGGCCTTGGCGAACACATTGACGGTCCAAATGAGGTTAGGGATGTACGATGGTGAGCCCTCAGGTCATCCGTATGGGAATCTTGGCCCAAGAGATGTGTGCAGCCCAAGTCACCAACACCTAGCCCTTGAAGCCGCCACACAAGGAATCGTGCTACTTAAAAACAAAGGCCCTTCTTTGCCTCTCTCCACAAGGACTTATCGCACCCTGGCTGTTATTGGGCCCAATTCTAATGCCACTGTCACAATGATTGGAAACTATGCAGGTATTGCTTGCGGATACACCAGCCCTTTGCAGGGAATAGGGAAATATGCCAAGACTATTATTCACGAGATGGGTTGTGCAAATGTGGCCTGCAGAGACAACAAGCAATTCGGGAGAGCTATAAATGCAGCCCAACAAGCGGATGCAACTGTGCTGGTGATGGGCCTGGATCAGTCCATCGAGGCTGAAACTGTGGACAGGGCTGGCCTGCTTCTTCCCGGTCACCAACAAGACCTTGTGTCAAAAGTTGCATCTGCCTCCAAGGGCCCAACGATTTTGGTGATAATGTCTGGCGGGCCTGTGGATATAAGTTTCGCAAAGAATGACCCTAGAATTGAAGGAATTTTGTGGGCCGGTTATCCTGGTCAAGCTGGTGGTGCTGCCATTGCAGATATCTTGTTTGGAAGATCTAACCCTGGAGGGAAGTTACCGATGACATGGTACCCAGAAGGGTACGTTGAAAAGTTGGCAATGACAAATATGGCAATGCGATCAAGGAAATCGAAAGGGTACCCTGGAAGAACGTACAGATTTTACAGTGGGCCGGTGGTGTATCCATTTGGTTACGGATTGTCTTACACGAATTTTGTTGAAACATTGGCAAGTGCACCCAAAGTGGTATCAATTCCCGTGGATGGGCACCGCCACAAGAATACCTCCAACATTGCTAACAAGGCAATTAAAGTCACACATGCACGATGTGCCAAGCTTTCTGTTACCCTTCACGTGGACGTTAAAAATGTTGGCTCCAGATATGGCACTCACACGTTGTTAGTTTTCTCCGCACCACCTCCTTCTAATGCCCACTGGGCTCCACATAAGCAACTTGTGGGCTTCCACAAAGTCCATCTTCCCCCCATGGCCCAACAACGACTTCGGATCAACATTCACGTTTGCAAGCTCCTCAGCCTCGTTGACACCTCCGGTATTAGAAGAATTCCAATGGGCTCTCACACTCTTCACATCTCTCATCTTAAACACTCTCTCACTCTTCACCCACTAACTCTTTGA 2403 0.496 MMFPYIYIYTYKHCSTPPITSQATTPFTFAFPIMASIFSPLTTIFFFFIVLWGGEARDPFACDPKNAATRGLPFCKTSLTIAERVKDLIGRLTVEEKVSLLVNNAAAVSRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGQVASDEARAMYNGGTGGLTYWSPNVNIFRDPRWGRGQETPGEDPLVAGKYAASYVRGLQGSDGNRLKVAACCKHFTAYDLDNWNGVDRFHFNAEVSKQDMEETFNVPFRMCVKEGNVASVMCSYNKVNGVPTCADPVLLNTTVRGLWGLNGYIVSDCDSVGVFYNTQHYTSTPEEAAADAIKAGLDLDCGPFLAQHTNNAVKKGLLSEADVNGALANTLTVQMRLGMYDGEPSGHPYGNLGPRDVCSPSHQHLALEAATQGIVLLKNKGPSLPLSTRTYRTLAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGKYAKTIIHEMGCANVACRDNKQFGRAINAAQQADATVLVMGLDQSIEAETVDRAGLLLPGHQQDLVSKVASASKGPTILVIMSGGPVDISFAKNDPRIEGILWAGYPGQAGGAAIADILFGRSNPGGKLPMTWYPEGYVEKLAMTNMAMRSRKSKGYPGRTYRFYSGPVVYPFGYGLSYTNFVETLASAPKVVSIPVDGHRHKNTSNIANKAIKVTHARCAKLSVTLHVDVKNVGSRYGTHTLLVFSAPPPSNAHWAPHKQLVGFHKVHLPPMAQQRLRINIHVCKLLSLVDTSGIRRIPMGSHTLHISHLKHSLTLHPLTL* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1284 800 Pfam Glycosyl hydrolase family 3 C-terminal domain 426 657 IPR002772 GO:0004553|GO:0005975
Vra8g1284 800 Gene3D - 412 658 IPR036881 GO:0004553|GO:0005975
Vra8g1284 800 SMART Fn3_like_2 719 790 IPR026891 -
Vra8g1284 800 Gene3D - 84 398 IPR036962 GO:0004553|GO:0005975
Vra8g1284 800 Pfam Fibronectin type III-like domain 721 787 IPR026891 -
Vra8g1284 800 Gene3D Immunoglobulins 681 798 IPR013783 -
Vra8g1284 800 PRINTS Glycosyl hydrolase family 3 signature 145 164 IPR001764 GO:0004553|GO:0005975
Vra8g1284 800 PRINTS Glycosyl hydrolase family 3 signature 232 248 IPR001764 GO:0004553|GO:0005975
Vra8g1284 800 PRINTS Glycosyl hydrolase family 3 signature 306 324 IPR001764 GO:0004553|GO:0005975
Vra8g1284 800 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 36 795 - -
Vra8g1284 800 PANTHER SUGAR HYDROLASE-RELATED 36 795 IPR044993 GO:0009044|GO:0045493
Vra8g1284 800 SUPERFAMILY (Trans)glycosidases 72 425 IPR017853 -
Vra8g1284 800 Pfam Glycosyl hydrolase family 3 N terminal domain 138 382 IPR001764 GO:0004553|GO:0005975
Vra8g1284 800 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 426 660 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1284 Vra-Chr8 28758373 28763245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1284 41 800 Glycoside Hydrolase AT1G02640 70.866 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1284 - - gmx:100798630 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1284 8 28758373 28763245 Vra8g1284 8 28758373 28763245 ECH
Vra3g0758 3 7829639 7834357 Vra8g1284 8 28758373 28763245 PCT