Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0758 ATGCTCCAAATGTCTTCAACCTTCTCACCCCTCGTTGCCGTCTTCCTCCTCTTTTTTCTGCTCCACTACACGTGCCAGGCACGTGAAGCATTCGCCTGTGACCCTAAAAATGCTGCCACCAAGAACTTGCCGTTTTGCAAGGTCTCAGTGGCGATACCGGAGAGGGTGAAGGACCTCATCGGAAGGTTGACGCTTGAGGAGAAGGTTAGGCTTCTGGTGAACAATGCCGCGGCGGTTCCGCGGCTGGGGATGAAAGGGTACGAGTGGTGGTCGGAGGCACTGCACGGCGTTTCAAATGTGGGCCCCGGAGTCAAGTTTAATGCAGAATTCCCCGGCGCGACTAGCTTCCCCCAAGTCATCACCACCGCTGCTTCCTTCAACGCTTCACTCTGGGAGTCAATCGGACGGGTTGTATCCGACGAGGCAAGGGCAATGTACAACGGTGGAACAGCAGGTCTAACCTATTGGAGTCCAAACGTGAACATTTTCAGGGACCCAAGGTGGGGCCGCGGACAGGAAACTCCCGGTGAGGACCCTGTGCTAGCCGGTATCTATGCTGCTAGTTACGTTAGAGGACTGCAGGGAACCCACCCTAGTCGGTTGAAGGTTGCTGCTTGTTGCAAACACTTTACGGCTTATGATCTCGATAATTGGAACGGCATGGATCGATTCCACTTTAATGCACAGGTAAGTAAGCAGGACATAGAGGATACATTCGACGTGCCATTCAGGATGTGTGTTAGCGAAGGGAAAGTAGCGAGTGTGATGTGTTCTTACAATCAAGTGAATGGGGTTCCCACTTGTGCGGACCCCAACCTCCTCAAGAAAACAGTGCGTGGCCTGTGGCAACTTGACGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTTTATAGTAATCAACATTATGCACCCACCCCCGAAGAAGCTGCCGCTGATGCCATTAAAGCAGGTTTGGATTTAGATTGTGGTCCCTTCCTGGCCGTGCACACGCAGGATGCTGTCAAAAAAGGCTTGCTGACCCAAGCTGACGTGGACGGGGCCCTGGTCAATACACTCACGGTCCAAATGAGGTTAGGTATGTTTGATGGAGAGCCATCGGCCCAAGAATATGGCAAATTGGGCCCAAACGACGTGTGCAAACCGGCCCATCAACAGCTGGCTCTTGAAGCTGCAACACAAGGAATTGTCCTTCTTAAGAACACCGGTCCTGTTTTGCCTCTCTCCCAACAGCATTATCGTACCGTGGCTGTCATTGGGCCCAATTCCAAGGCCACTGTTACAATGATTGGAAACTATGCTGGTATTGCTTGTGGATACACCAGCCCCTTACAAGGAATAGGAAGATATGCCACGACTCATCATCAGTTGGGTTGTGAAAATGTAGCTTGTAAGAATGATAAACTTTTTGGGCCCGCAATAAACGCAGCCCGTCAAGCGGATGCAACCGTTCTGGTTATGGGCTTGGACCAGTCCATCGAAGCTGAAACAGTGGACAGGACCGGCTTGCTTTTGCCTGGGCGTCAACAGGACCTTGTTTCAAAAGTTGCAGCTGCCTCGAAGGGACCGACCATTCTGGTCCTAATGTCTGGTGGGCCTGTTGACATCACTTTTGCGAAGAATAACCCTCGGATCGTGGGCATCCTCTGGGCCGGTTATCCGGGCCAAGCCGGAGGTGCCGCCATTGCAGATATACTGTTTGGAACTTCTAGCCCAGGGGGAAAGCTTCCGATGACATGGTACCCAGAAGAGTACCTGAGAAAGTTGCCGATGACGAAGATGGCAATGCGAGGAAGTGAATCGGCAGGGTACCCAGGAAGAACGTATAGATTCTACAAGGGTGAAGTGGTGTATCCATTTGGGCACGGGTTAACTTATACTCACTTTGTCCACACACTGGCAAGTGCTCCCACAGTGGTGTCAGTTCCCGTGAACGGTCACCGGCGTTCGAATGCCAGCGACATTTCGAACAGAGCCATTAGAGTGACTCATGCGCGGTGTGACAACCTCTTCATCACCCTACAGGTGGACATTAAAAACGTGGGGTCCAGAGATGGGACACACACGTTGGTGGTGTTCTCTGCTCCACCTGCCGCTGCCGGGCATTGGGCACTGGAGAAGCAGCTTGTGGCCTTCCAGAAAGTCCATGTTCCTGCCAAGGCTCAACACAGAGTCGGAGTCCATATTCACGTCTGCAAACTCCTGAGTATAGTGGATAAGTCTGGGATCAGGAGAATCCCGTTGGGGTTACACAGTTTTAACATCGGCGACGTTAAACATTCCGTCTCACTTCAAGCTGCAGCACTTGGGATTATCAAGTCCTGA 2328 0.5202 MLQMSSTFSPLVAVFLLFFLLHYTCQAREAFACDPKNAATKNLPFCKVSVAIPERVKDLIGRLTLEEKVRLLVNNAAAVPRLGMKGYEWWSEALHGVSNVGPGVKFNAEFPGATSFPQVITTAASFNASLWESIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGIYAASYVRGLQGTHPSRLKVAACCKHFTAYDLDNWNGMDRFHFNAQVSKQDIEDTFDVPFRMCVSEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGLWQLDGYIVSDCDSVGVFYSNQHYAPTPEEAAADAIKAGLDLDCGPFLAVHTQDAVKKGLLTQADVDGALVNTLTVQMRLGMFDGEPSAQEYGKLGPNDVCKPAHQQLALEAATQGIVLLKNTGPVLPLSQQHYRTVAVIGPNSKATVTMIGNYAGIACGYTSPLQGIGRYATTHHQLGCENVACKNDKLFGPAINAARQADATVLVMGLDQSIEAETVDRTGLLLPGRQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNNPRIVGILWAGYPGQAGGAAIADILFGTSSPGGKLPMTWYPEEYLRKLPMTKMAMRGSESAGYPGRTYRFYKGEVVYPFGHGLTYTHFVHTLASAPTVVSVPVNGHRRSNASDISNRAIRVTHARCDNLFITLQVDIKNVGSRDGTHTLVVFSAPPAAAGHWALEKQLVAFQKVHVPAKAQHRVGVHIHVCKLLSIVDKSGIRRIPLGLHSFNIGDVKHSVSLQAAALGIIKS* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0758 775 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 397 630 IPR036881 GO:0004553|GO:0005975
Vra3g0758 775 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 6 770 - -
Vra3g0758 775 SUPERFAMILY (Trans)glycosidases 43 396 IPR017853 -
Vra3g0758 775 Gene3D - 382 628 IPR036881 GO:0004553|GO:0005975
Vra3g0758 775 PRINTS Glycosyl hydrolase family 3 signature 116 135 IPR001764 GO:0004553|GO:0005975
Vra3g0758 775 PRINTS Glycosyl hydrolase family 3 signature 203 219 IPR001764 GO:0004553|GO:0005975
Vra3g0758 775 PRINTS Glycosyl hydrolase family 3 signature 277 295 IPR001764 GO:0004553|GO:0005975
Vra3g0758 775 Pfam Glycosyl hydrolase family 3 N terminal domain 111 352 IPR001764 GO:0004553|GO:0005975
Vra3g0758 775 Gene3D - 55 373 IPR036962 GO:0004553|GO:0005975
Vra3g0758 775 PANTHER SUGAR HYDROLASE-RELATED 6 770 IPR044993 GO:0009044|GO:0045493
Vra3g0758 775 SMART Fn3_like_2 689 760 IPR026891 -
Vra3g0758 775 Pfam Glycosyl hydrolase family 3 C-terminal domain 397 627 IPR002772 GO:0004553|GO:0005975
Vra3g0758 775 Gene3D Immunoglobulins 651 771 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0758 Vra-Chr3 7829639 7834357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0758 16 775 Glycoside Hydrolase AT1G02640 72.346 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0758 - - gmx:100789316 1423.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0758 3 7829639 7834357 Vra3g0758 3 7829639 7834357 ECH
Vra3g0758 3 7829639 7834357 Vra8g1284 8 28758373 28763245 PCT