Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1283 ATGGCCGTGACCACTCCCTATCTCAATGCAACAGAAAAAAAGCACTGGTGGCTCACCAACCGCAAGGTTGTTGAGAAATACATCAGAGACGCTCGCACTCTGATGGCCACGCAGGAACAGAGCGAGATCGCTTCGGCGCTCAACCTTCTCGACGCGGCTCTGGCGATCTATCCGCGGCTCGACGAAGCGCTCGAGCTGCGAGCGAGGTGTCTGCTCTGTCTGCGGAGGTTCAAAGAGGTAGCGGATATGCTTCAAGACTACATCCCGAGCCTGAAAATGGCGAACGATGAGTCGGTTTCTTCGGATAGTTCTTCACAACAACTTTCTAGGGAGGGCGCGAAGCTCCTCTCCTCTGATACCTCGGGCTCGGATCAGAGCTTCAAGTGCTTCTCTGTCTCTGACTTGAAGAAGAAGGTTATGGCAGGGCTGTGTAAAAGTTGCGACAAGGAAGGGTATTGGAGATACTTGGTTCTGGGGAAAGCATGCTGCCACCTAGGCCTAATGGAAGACGCGATGGTTCTTCTCCAAACGGGGAAACGCCTCGCCTCCGCCGCGTTCCGCCGCGAGAGCGTGTGCTGGTCCGACGATAGCTTCTCCCTCTCGAACCCCCTCTTCTCCGGCGACTCAAGCCCACCCCGGGTCCCACTTCCGGAGTCTGAAGCAGTGACCCAACTCCTCGCCCACATAAAGCTCCTCCTCCGGCGCCGTGCCGCCGCGCTCGCTGCCCTGGAAGCCGGCCTCCACTCCGAAGCCATACGCCACTTCTCCAAAATCGTGGACGGGCGACGCGGTGCCCCGCAGGCCTTCCTCGCCGAGTGCTACATGCACAGGGCCTCCGCTCACCGGTCCGCCGGCCGAATCGCCGATTCTATTGCCGATTGCAACAGAACCCTCGCCTTGGACCCCACCTGCATCCAAGCTCTGGAAACTCGAGCCTCTCTTCTGGAATCCATTCGTTGCTTCCCAGATTCACTCCATGACCTCGAACATCTCAAACTCCTCTACAACACCATCTTGCGCGACCGCAAACTCGCAGGTCCTGCCTGGAAGCGCCAAAACGTTCGCGCCAGAGAAATTCCTGGGAAACTCTGCGCCCTCACCACGAAGATCCAGGAACTGAAACAGAGGGTAGCTTCGGGAGATACCTCCAACGTGGACTACCATGGTCTCATTGGCTTGCGGCGCGGCTGTGGTCGTTCGGAGTTACAGAGAGCGCATTTGCTTCTGTCTCTGAAACACAAGCCCGACAAGGCAATGTGCTTCATCGAGCGGTGCGAGCTGGCGGACGAACGGGACCTCGATTCTGTTAAGGAGAGGGCGAGAATGTCGTCGCTCTTGCTCTACCGGCTGCTCCAGAAGGGTTACACCAACGTGATGGGTGCCATAATGGACGAGGAGGCTGCTGAGAAGCAAAGGAAGAAAAAGGTTATGGAAGCTCAGGCCAAAGTCGAGAAATTGGAAAACAAAAAGTGCACTGTTTCGTCTCCTTCCACCGCCAATCCCGCGGTTTTTCAGGGAGTCTTTTGCCGCGATCTTGCGGTGGTTGGAAACTTGCTCTCGCAAACGGGATTCAACCGTTCCATTCCGGTCAAGTACGAGGCGTTGAGCTGCTGA 1614 0.5682 MAVTTPYLNATEKKHWWLTNRKVVEKYIRDARTLMATQEQSEIASALNLLDAALAIYPRLDEALELRARCLLCLRRFKEVADMLQDYIPSLKMANDESVSSDSSSQQLSREGAKLLSSDTSGSDQSFKCFSVSDLKKKVMAGLCKSCDKEGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFSLSNPLFSGDSSPPRVPLPESEAVTQLLAHIKLLLRRRAAALAALEAGLHSEAIRHFSKIVDGRRGAPQAFLAECYMHRASAHRSAGRIADSIADCNRTLALDPTCIQALETRASLLESIRCFPDSLHDLEHLKLLYNTILRDRKLAGPAWKRQNVRAREIPGKLCALTTKIQELKQRVASGDTSNVDYHGLIGLRRGCGRSELQRAHLLLSLKHKPDKAMCFIERCELADERDLDSVKERARMSSLLLYRLLQKGYTNVMGAIMDEEAAEKQRKKKVMEAQAKVEKLENKKCTVSSPSTANPAVFQGVFCRDLAVVGNLLSQTGFNRSIPVKYEALSC* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1283 537 CDD DnaJ 386 418 IPR001623 -
Vra8g1283 537 SMART tpr_5 271 304 IPR019734 GO:0005515
Vra8g1283 537 SMART tpr_5 152 185 IPR019734 GO:0005515
Vra8g1283 537 SUPERFAMILY TPR-like 237 333 IPR011990 GO:0005515
Vra8g1283 537 PANTHER - 1 537 - -
Vra8g1283 537 Gene3D Tetratricopeptide repeat domain 8 329 IPR011990 GO:0005515
Vra8g1283 537 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 537 - -
Vra8g1283 537 Coils Coil 469 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1283 Vra-Chr8 28744781 28747821 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1283 - - gmx:106797171 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1283 8 28744781 28747821 Vra8g1283 8 28744781 28747821 ECH
Vra3g0757 3 7818225 7821537 Vra8g1283 8 28744781 28747821 PCT