Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0757 ATGGCCATCACTACTCACACTCTATCCTCCATTGAAAAAAGACATTGGTGGCTTACCAATCGAAAGATTGTTGAGAAATACATCAAAGACGCTCGGAGTCTTATAGCCTCGCAAGATCAGAGGGAGATTGCTTCGGCTCTCAACCTTCTCGATGCGGCTCTGGCGATTTCTCCCAGGCTGGACCAAGCGCTTGAACTTAGAGCCAGGGCTCTGCTCTGTTTGCGGCGCTTCAAGGAGGTCGCCGATATGCTTCAGGACTACATTCCGAGCCTCCGAATCAACGATGACTCCTCTTCCTCCTCCTCCTCCTCTGTTTCATCCGACACCTCGAGAGAGGGAGTGAAGCTTCTCTCTTCCTGTGAGTCGCCGGTGCGAGATCAGAGCTTCAAGTGCTTTTCTGTTTCCGACCTTAAGAAGAAGGTCATGGCAGGGCTGTGTAAAAACGGCGAGAAGGAAGGGCAATGGAGATACTTGGTGTTGGGTGAAGCATGCTGCCACCTAGGCCTAATGGAGGATGCAATGGTTCTTCTTCAAACAGGAAAGCGTCTTGCAAGCGCTACACTCCGGCGCGAGAGTGTGTGCTGGTCGCAAGACAGCTTCAATGTTACAAACATCCAATTCTCCAGCGACGCCATAAGTGCGCCACCCACAACTCCACCGCGAACTCTTATTGCGGTGGATTCCGAGAGCGTGTCCCAACTCCTCGGCCATATAAAGTTCCTCCTCCGGCGACGCGCCGCCGCATTGGCCGCCCTCGATGCCGGGCTCTACTCAGAGGCCATCCGCCACTTCTCGAAAATTGTGGACGGCCGGCGTAGCGCACCGCAGAGCTTCCTTGTCGAATGCTATCTCCTCCGTGCCTCCGCTCACCGTTCCGCCGGTAGAATCGCAGAGTCAATTGCGGATTGTAACCGCACCCTTGCTTTGGACCCCACTTGCATTCAAGCACTAGAAACCAGAGCTTCACTCTTCGAAAACATTCGTTGTTTACCCGATTCTCTTCACGACCTCGAACACTTGAAGCTCCTCTATAATTCAATTTTACGAGACCGCAAGCTTCCCGGTCCTGCGTGGAAGCGCCACAACGTGCGTTATAGGGAAATTCCTGGGAAACTCTGCACCCTCACTATTAAAATTCAAGAACTGAAACAGAAGCTGGCATCTCGAGAAACAGGGAATGTCGATTATTATGCTTTGATTGGTGTTCGACGAGGTTGTTCACGATCGGAGTTGGAAAGGGCTCACTTGTTGCTTTCCTTGCGGCACAAGCCTGATAAGGCAACGGGGTTCATCGAAAGGTGCGAGCTTGCGGATGAGCGTGATGTTGAGTCGGTTAATGAGAGGGCGAAGATGTCATCTTTGTTGTTGTATAGATTGGTTCAGAAGGGTTACACTGCTGTGATGAGTAACATCATGGATGAGGAAGCTGCTGAGAAACAGAGAAAGAAGGCTGCTTTGTTGGCAATGCAAGTGCAGAAAGAGAAAGCCGATGAACCTGAGTTGTTGAGCAAAGTTGAGTGTACCAGGAGCAGCGTGGAAAATAATAATAATAATGATAATGATAATAATAATAATAATAATAATGATAATAATCATAGTGATAATAATAATAATAATAATAATACTGCTCAAATGTCTCAAAATAGGTCCATGGTGTGTTCTTCTACTGTGAATCCTGCGATGTTTCAGGGTGTTTTCTGCCGTGACATTGCAGTGGTGGGGAACTTGCTTTCTCAGGTGGGGTTTAATCGGTCCATGCCGGTGAAGTATGAAGCGTTGAGCTGTTGA 1788 0.4905 MAITTHTLSSIEKRHWWLTNRKIVEKYIKDARSLIASQDQREIASALNLLDAALAISPRLDQALELRARALLCLRRFKEVADMLQDYIPSLRINDDSSSSSSSSVSSDTSREGVKLLSSCESPVRDQSFKCFSVSDLKKKVMAGLCKNGEKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRLASATLRRESVCWSQDSFNVTNIQFSSDAISAPPTTPPRTLIAVDSESVSQLLGHIKFLLRRRAAALAALDAGLYSEAIRHFSKIVDGRRSAPQSFLVECYLLRASAHRSAGRIAESIADCNRTLALDPTCIQALETRASLFENIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCTLTIKIQELKQKLASRETGNVDYYALIGVRRGCSRSELERAHLLLSLRHKPDKATGFIERCELADERDVESVNERAKMSSLLLYRLVQKGYTAVMSNIMDEEAAEKQRKKAALLAMQVQKEKADEPELLSKVECTRSSVENNNNNDNDNNNNNNNDNNHSDNNNNNNNTAQMSQNRSMVCSSTVNPAMFQGVFCRDIAVVGNLLSQVGFNRSMPVKYEALSC* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0757 595 Gene3D DnaJ domain 378 499 IPR036869 -
Vra3g0757 595 MobiDBLite consensus disorder prediction 511 550 - -
Vra3g0757 595 SUPERFAMILY Chaperone J-domain 389 429 IPR036869 -
Vra3g0757 595 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 595 - -
Vra3g0757 595 SMART tpr_5 280 313 IPR019734 GO:0005515
Vra3g0757 595 SUPERFAMILY TPR-like 246 341 IPR011990 GO:0005515
Vra3g0757 595 CDD DnaJ 395 429 IPR001623 -
Vra3g0757 595 Gene3D Tetratricopeptide repeat domain 206 353 IPR011990 GO:0005515
Vra3g0757 595 PANTHER - 1 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0757 Vra-Chr3 7818225 7821537 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0757 - - vra:106757864 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0757 3 7818225 7821537 Vra3g0757 3 7818225 7821537 ECH
Vra3g0757 3 7818225 7821537 Vra8g1283 8 28744781 28747821 PCT