Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1279 ATGGAGGCTGTGTGCTTAAAATCTGGAATGCTTCCCACGATCTCTATTGGTGGGTCGCTGGACGCACGTGCCAATCATTCTCAGGTGAGCACGGTGGGGCGTTCCGCTGGGGATAAACCGCCGCAAAGGTCGTTGTTTTCGAGGTTTTCCTTTCCGTATCCTTTGGAATCTCTCTGGCATCGGGGGAACAGCAGCAAGCACAAAGGGCTCGCCCTCGACGACGCCGTTTTGGCGGATAACGCCGAAGCGAAGGCCGTTAGAGATGACGGCCAGGGTGACGAAGTGGAACGCGGAAACTGGGTTTTGAAGATTTTGCGCGTGAAGTCCGTGTGGGAGGGGAAACAGCGCCATGAAGAGGAGGTCGCGGTTAATGATCAGACTCAAAGCAATTACGATGGGGAGGAAGTGTGTGAATGTGATGCTTGCGGAGTTGGGGAAGATGACGGTTACGGCGACGCGGAAGAGGCCGAATTCGATAGAGGCTCCTTTTCCAGAATGCTCCGGAGGGTATCGTTAGCAGAAGCTAGGTTGTATGCTCAGATGTCACACTTGGGGAACTTGGCTTACGATATACCGAAAATCAAGCCCGGGAAACTCTTAAAACATTATGGTTTGCGCCTTGTAACTTCATCAATAGAGAAGAAGGAATTGGAAGCAATAGCTGAAAAAGATACCCAGAAAGTTGAAACTGACGAGAAGGAAGAAGAAGAAGAAGAGGGAAAAAGAGAGGATCCGAAGCACAGTGGGTATAACATAAGTGCAACCACTGCTTATAACATTGCCGCCTCTGCTGCCACATATCTGCATTCTCAGACTAGGAGCATATTTCCATTCAAATCCTCAAATGCAGTGACTGGTGAAGCTTCACTCGATGGAAGCAATGAGAGCCTAGACAGGGACTTAATAAACTCAGAGGTGTCATCTTTGATGGCCACAACTGATTCAGTGACAGCAGTGGTTGCGGCAAAGGAGGAAGTAAAGCAGGCTGTCGCTGATGATTTAAACTCTGCACATTCATCACCCTGTGAATGGTTTGTCTGTGATGATGACCAGAGTGGTGCAAGATTTTTTGTTATTCAGGGTTCAGAGACAATGGCTTCTTGGCAAGCAAACCTGCTTTTTGAACCGATTAAATTTGAGGGGTTAGACGTCCTTGTGCACAGAGGTATATACGAGGCTGCTAAAGGGATGTATGAGCAGATGTTGCCAGAAGTACATGCTCACCTAAAATCTCGAGGTTCTCGTGCAACTTTTCGTTTCACTGGGCATTCTCTTGGTGGAAGCCTGGCATTGCTAGTAAATCTTATGCTGTTGATTAGGCAGGAAGTGCCTACCTCCTCTCTACTTCCTGTGGTAACATTTGGTTCCCCATCCATCATGTGTGGGGGGGATAGTCTGCTAGAAAAATTAGGTTTGCCTAGGAGTCATGTTCAAGCAATTACAATGCACAGAGACATTGTTCCTCGAGCATTTTCTTGCAATTACCCTAACCACGTTGCAGAACTGTTGAAGGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGAAGGTACTATATACACCAATGGGTAATCTGCTGATTCTGCAGCCAGATGAGAAATTTTCACCAAGCCATCATCTCCTGCCTTCAGGCAGTGGTTTATATCTTCTATGTTGTCCTTTGTCAGAATCCAAGGACACAGACAAGCAGCTCCGAGCTGCTCAGACGGTGTTCTTGAACTCACCTCACCCACTTGAGATATTAAGTGACCGTTCTGCTTATGGATCTGGAGGAAGTATACAGAGAGATCATGACATGAATTCCTACTTAAAGTCTGTGAGAACTGTGATTCGCCAGGAACTTAACCAGATCCGTAAAGTCAAGAGGGAGCAAAGGCGGAAGGTGTGGTGGCCTCTTGTGTTACCACGTGGAATGGATACCAGTAATGTTGCTGGGAGGTCCATGATATCAATCAATGTAAGTCAACGTCAGTCACCCTTCTCTGGCATGATACAAACAGGTAGACAGTCCCTGAAAAGGTTCAGGAGGCTTGTTACATCCCAGCATATACATTTGTTTGTGCTGCTCTTGTTCCCTGCTCGCTTGTTACTCTTGGGAACATACAGCCTAATTAGCCTTAAATGA 2136 0.4705 MEAVCLKSGMLPTISIGGSLDARANHSQVSTVGRSAGDKPPQRSLFSRFSFPYPLESLWHRGNSSKHKGLALDDAVLADNAEAKAVRDDGQGDEVERGNWVLKILRVKSVWEGKQRHEEEVAVNDQTQSNYDGEEVCECDACGVGEDDGYGDAEEAEFDRGSFSRMLRRVSLAEARLYAQMSHLGNLAYDIPKIKPGKLLKHYGLRLVTSSIEKKELEAIAEKDTQKVETDEKEEEEEEGKREDPKHSGYNISATTAYNIAASAATYLHSQTRSIFPFKSSNAVTGEASLDGSNESLDRDLINSEVSSLMATTDSVTAVVAAKEEVKQAVADDLNSAHSSPCEWFVCDDDQSGARFFVIQGSETMASWQANLLFEPIKFEGLDVLVHRGIYEAAKGMYEQMLPEVHAHLKSRGSRATFRFTGHSLGGSLALLVNLMLLIRQEVPTSSLLPVVTFGSPSIMCGGDSLLEKLGLPRSHVQAITMHRDIVPRAFSCNYPNHVAELLKAVNGNFRSHPCLNKQKVLYTPMGNLLILQPDEKFSPSHHLLPSGSGLYLLCCPLSESKDTDKQLRAAQTVFLNSPHPLEILSDRSAYGSGGSIQRDHDMNSYLKSVRTVIRQELNQIRKVKREQRRKVWWPLVLPRGMDTSNVAGRSMISINVSQRQSPFSGMIQTGRQSLKRFRRLVTSQHIHLFVLLLFPARLLLLGTYSLISLK* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1279 711 Coils Coil 214 234 - -
Vra8g1279 711 Pfam Lipase (class 3) 357 494 IPR002921 GO:0006629
Vra8g1279 711 MobiDBLite consensus disorder prediction 223 250 - -
Vra8g1279 711 Gene3D alpha/beta hydrolase 302 526 IPR029058 -
Vra8g1279 711 Coils Coil 607 627 - -
Vra8g1279 711 CDD Lipase_3 340 496 - -
Vra8g1279 711 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 33 707 - -
Vra8g1279 711 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 33 707 IPR043367 GO:0008970
Vra8g1279 711 SUPERFAMILY alpha/beta-Hydrolases 339 529 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1279 Vra-Chr8 28695551 28699145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1279 1 711 Acyl Lipid Metabolism Gene Families AT1G02660 55.946 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1279 - - gmx:100786628 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1279 8 28695551 28699145 Vra8g1279 8 28695551 28699145 ECH
Vra3g0756 3 7806929 7810471 Vra8g1279 8 28695551 28699145 PCT