Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1260 ATGAAGAGGCTAGTAACTGTGCTTTTACTCATAGTATTAAGCACTGCTGTGGGAGGTCAAGATGATCATGGACCGTGTAAACAGAAAGTGTTGGATCCTAGGCCTCACAGTGTGTCAATCTTGGAGTTTGGGGCAGTTGGAGATGGAAAAACATTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCCGACAAAGGTGGTGCTCAACTATATGTTCCATCCGGCAAATGGCTTTCCGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGGCGCAACCATCATTGCATCGCAGGATTATGCACACTGGCCTGCAGTGGATCCCCTACCCTCCTATGGTCGGGGAATTGATGTTCCGGGTGGGAGATATAGCAGTTTGATTTATGGACGCAACTTAAGTGATGTTGTGATTACAGGTGACAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGAACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTATTGGTTCTGATGATATCGTAATCTCAAATTTGACCCTTTTAAACTCTCCTGCCTGGAGCATTCATCCAGTGTATTGCAGCAATGTCCGAATCCAAAACATAACAGTTCATGCACCAACCGAGTTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCCGAGCATGTTTGCATTGACAACAGCAATATTAGCACTGGTCATGATGCAATTGCGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCTTATGGCAAACCAACCTCGAATGTCCACATCAATGGTGTTTATCTGCAATCATCATCTGGTGCTGGCCTAGCATTTGGAAGCGAGATGTCTGGAGGCATCTCTGGTATAACAGCAGAGCATCTCCATATTATAAACTCGACCATTGGCATTGAACTGAAGACAACTAGGGGTCGAGGTGGTTATATGAGAAACATCTTCATTTCTGATACAAAATTGGAAAATATTTACTTGGGTATTAGCATGACAGGATTCTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCGGTGGTTGGTAATGTTACTTTTGAGAATGTGATTGGTGCAAATGTTGCTATTGCTGGAAATTTTTCAGGAATAGTTGATTCACCCTTCACTCCTATTTTCCTTTCAAACGTGACATTTTCTACCGGTTCCGAGTCATCTTCTTCATGGTTTTGTTCTAATGTAAAGGGAGTCTCTGAGAAGGTGTTTCCTGAGCCATGTGCTGACCTGAAGAACACACTGTCAAACTTTTCGTCTATTTTTTCTTCTCTACATCCATCGTACAGTTATGTCTCAAGCGCATGA 1362 0.4266 MKRLVTVLLLIVLSTAVGGQDDHGPCKQKVLDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAQLYVPSGKWLSGSFNLTSHLTLFLERGATIIASQDYAHWPAVDPLPSYGRGIDVPGGRYSSLIYGRNLSDVVITGDNGIIDGQGSVWWDLIRTHSLNYSRPHIIELIGSDDIVISNLTLLNSPAWSIHPVYCSNVRIQNITVHAPTEFPYTSGIVPDSSEHVCIDNSNISTGHDAIALKSGWDQYGVAYGKPTSNVHINGVYLQSSSGAGLAFGSEMSGGISGITAEHLHIINSTIGIELKTTRGRGGYMRNIFISDTKLENIYLGISMTGFSGSHPDDKYDPNAVPVVGNVTFENVIGANVAIAGNFSGIVDSPFTPIFLSNVTFSTGSESSSSWFCSNVKGVSEKVFPEPCADLKNTLSNFSSIFSSLHPSYSYVSSA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1260 453 SUPERFAMILY Pectin lyase-like 27 441 IPR011050 -
Vra8g1260 453 Pfam Pectate lyase superfamily protein 38 95 IPR024535 -
Vra8g1260 453 SMART pbh1 266 288 IPR006626 -
Vra8g1260 453 SMART pbh1 294 315 IPR006626 -
Vra8g1260 453 SMART pbh1 232 253 IPR006626 -
Vra8g1260 453 SMART pbh1 205 231 IPR006626 -
Vra8g1260 453 SMART pbh1 323 344 IPR006626 -
Vra8g1260 453 Gene3D - 26 422 IPR012334 -
Vra8g1260 453 PANTHER POLYGALACTURONASE-RELATED 5 443 - -
Vra8g1260 453 PANTHER PECTIN LYASE-RELATED 5 443 - -
Vra8g1260 453 Pfam Glycosyl hydrolases family 28 133 415 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1260 Vra-Chr8 28384189 28387959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1260 1 441 Glycoside Hydrolase AT3G16850 58.465 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1260 - - gmx:100801823 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1260 8 28384189 28387959 Vra8g1260 8 28384189 28387959 ECH
Vra3g0738 3 7691667 7695890 Vra8g1260 8 28384189 28387959 PCT