Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0738 ATGAGTACAAAGTACTTCTCTAGCATTATATACGAAATGCTGGTCCTCTCTTTCTATTGTTCTGTATTCTATGTTCTTCATCTAAGTCGCTCCCTCTCCTTTGCTTGCTCCATGCAACTGTTCTTGCACTGGATTCAGAACTTTGTCGCCTCATTGAAGTTTCAACTTACTGCTGCTCAAGCAGACATGAAGGAGCTAGTGGCAATGCTTTTCCTTGTTGCAATATGCGCGGCTGTGGAAAGCAACGGAGAAGAAAATGGTGGACCATGTAAACAAAATGCGTTGAATGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCTGTTGGAGATGGAATAACACTGAACACAGTTGCGTTCCAAAACGCAATATTTTATCTCAAGTCGTTTGCTGACAAAGGGGGTGCCCAACTATATGTTCCATCTGGTACATGGCTTACTGGGAGTTTTAACCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGTGCTACCATCATTGCATCTCAGGATTGTTCCCATTGGGATGTATTGGATTCGCTCCCTTCTTATGGTAGAGGAACTGGGAGATATGGCAGTTTAATCTACGGACAGAATTTAAGTGATGTGGTAGTTACTGGTGATAATGGAACAATAGACGGACAAGGTTCTATCTGGTGGAAGCTGTTCAGTTCTCATTCCTTAAACTACAGTCGACCAAATCTTATAGAATTTGTTGATTCGGTTGATGTCATAATTTCCAATTTGACTTTTGTGGACTATCCAGCTTGGGGCATCCATCCTGTATATTGCAGTAACGTTCAAATTCAGAACATCACTTCTCGTGCACCTGCCGAATCCCCTTACACAAGTGGCATAGTTCCAGATTCTTCTAAGTATGTTTGCATCGAGAACAGTAACATTAGCACTGGTCATGATGCAATTGTGTTGAAGAGTGGTTGGGATCAGTACGGAATTGCCTATGGAAAACCAACCTCGAGTGTCCACATCCGCAATGTTTACCTAGAATCATCATCAGGTGCTGGCTTGGCTTTGGGGAGTGAGATGTCTGGGGGAATATCAGATGTTATTGCAGAAAAGCTTCACATACTTAACTCGTCTATAGGCATTGAACTGAAAACAACTAGGGGCAGAGGAGGCTATATGAAAGGCATCTTCATTTCTGATGCAGAATTGGAAAATATTCACTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGACGACAAGTATGACACAAGTGCACTTCCAGTTGTTGGTAGCATTACTTTCAAGAATGTGATGGGTGCAAATATTGATGTTGCTGGGAATTTTTCAGGAATATTTGAATCACCATTCTCAAAAATCTGTCTTTCAAACGTGACTTTTTCTCTCAGTTATGAGCTATCCCCTTCGTGGTTCTGTTCTAATGTAATTGGTTTCTCCGAGGAGGTGATTCCTGAGCCATGCCCCGATCTCCAGAGCTCCTATTCCAAGTTCTTCTTTTCTTGCTTTGCTTCCCTATATCCACACCCTAGTAATATCTTCGGCTCTTTAGATCAAGTACTATAA 1560 0.4256 MSTKYFSSIIYEMLVLSFYCSVFYVLHLSRSLSFACSMQLFLHWIQNFVASLKFQLTAAQADMKELVAMLFLVAICAAVESNGEENGGPCKQNALNARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLERGATIIASQDCSHWDVLDSLPSYGRGTGRYGSLIYGQNLSDVVVTGDNGTIDGQGSIWWKLFSSHSLNYSRPNLIEFVDSVDVIISNLTFVDYPAWGIHPVYCSNVQIQNITSRAPAESPYTSGIVPDSSKYVCIENSNISTGHDAIVLKSGWDQYGIAYGKPTSSVHIRNVYLESSSGAGLALGSEMSGGISDVIAEKLHILNSSIGIELKTTRGRGGYMKGIFISDAELENIHLGISMTGYSGFHPDDKYDTSALPVVGSITFKNVMGANIDVAGNFSGIFESPFSKICLSNVTFSLSYELSPSWFCSNVIGFSEEVIPEPCPDLQSSYSKFFFSCFASLYPHPSNIFGSLDQVL* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0738 519 Pfam Glycosyl hydrolases family 28 185 474 IPR000743 GO:0004650|GO:0005975
Vra3g0738 519 PANTHER PECTIN LYASE-RELATED 67 506 - -
Vra3g0738 519 SUPERFAMILY Pectin lyase-like 92 490 IPR011050 -
Vra3g0738 519 Gene3D - 89 475 IPR012334 -
Vra3g0738 519 PANTHER POLYGALACTURONASE-RELATED 67 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0738 Vra-Chr3 7691667 7695890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0738 63 502 Glycoside Hydrolase AT3G16850 60.225 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0738 - - gmx:100787190 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0738 3 7691667 7695890 Vra3g0738 3 7691667 7695890 ECH
Vra3g0738 3 7691667 7695890 Vra8g1260 8 28384189 28387959 PCT