Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1253 ATGACTTTCTCCCTTTCTCTCCCCATTCTGCTTTCCCTTCTCTCTGTTTTTCTGCTACATGCCAATGCCTCTCCACTCCATTACAATCACCCCATTCACCACCGCCACCCTCGTTTTGCCACTCATGACTACAGAGATGCTCTCACCAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGGGACTCTGGTCTTTCTGATGGCGCCGCCATGCGTGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAACGTCAAATTTGGCTTCCCCATGGCCTTCACCACCACCATGCTCTCATGGAGCGTTATTGAGTTTGGTGGGCTTATGAAAGGTGAGTTGCAGAATGCCAGAGTGGCCATTCGCTGGGCCACTGATTATCTTCTCAAAGCTACTGCACATCCCAATACCATTTATGTTCAGGTGGGGGATGCTAAGAAGGACCATTCTTGTTGGGAGAGACCAGAGGACATGGACACTCCAAGAAGTGTGTTCAAAATAGATGCAAACACACCTGGTTCAGAAGTTGCCGCGGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTGGTTTTTAGAAGAACTGACCCCACATACTCAAAAGTTTTAGCTAGAAGGGCCATCAGGGTATTCCAGTTTGCTGATAAATACAGAGGATCCTACAGCAATGCCTTGAAACCCTTTGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATTAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCCGGAGCAAGAATACTTCTCTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGATTACAAGGGGCATGCGGACAATTTCGTCTGTTCTCTAATTCCTGGGACATCTTTCTCTTCCACCCAGTATACCCCAGGTGGGCTTCTTTTTAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTGCTGTTAACATATGCCAAATACTTGACCTCAGCTCATACGGTTGTTAACTGCGGCGGAATCGCAGTAACACCAAAGAGACTCCGGTCAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCCTTAAAGATGTCGTACATGGTGGGGTATGGTCCAAGATACCCAAGAAGGATACACCACAGGGGTTCATCTCTACCGTCCATCGGTATACACCCTGGAAAGATCCAATGTCGTGCAGGCTTCAGTGTGATGAATTCACAATCTCCCAACCCAAACATTCTGGTGGGGGCGATTGTGGGTGGACCGGACCAACATGATAGGTTCCCAGATGAGCGGTCGGATTATGAGCAATCAGAGCCAGCCACATACATTAACTCACCCCTTGTAGGAGCACTGGCGTATCTTGCACACTCATTTGGTCAACTCTAG 1524 0.4843 MTFSLSLPILLSLLSVFLLHANASPLHYNHPIHHRHPRFATHDYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSGLSDGAAMRVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNARVAIRWATDYLLKATAHPNTIYVQVGDAKKDHSCWERPEDMDTPRSVFKIDANTPGSEVAAETAAALAAASLVFRRTDPTYSKVLARRAIRVFQFADKYRGSYSNALKPFVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLIPGTSFSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHTVVNCGGIAVTPKRLRSIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIGIHPGKIQCRAGFSVMNSQSPNPNILVGAIVGGPDQHDRFPDERSDYEQSEPATYINSPLVGALAYLAHSFGQL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1253 507 Gene3D - 39 507 IPR012341 GO:0005975
Vra8g1253 507 SUPERFAMILY Six-hairpin glycosidases 41 505 IPR008928 GO:0005975
Vra8g1253 507 Pfam Glycosyl hydrolase family 9 44 497 IPR001701 GO:0004553|GO:0005975
Vra8g1253 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 473 491 IPR033126 -
Vra8g1253 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
Vra8g1253 507 PANTHER ENDO-1,4-BETA-GLUCANASE 15 507 - -
Vra8g1253 507 PANTHER ENDOGLUCANASE 17 15 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1253 Vra-Chr8 28289861 28292479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1253 1 503 Glycoside Hydrolase AT1G02800 75.794 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1253 K01179 - gmx:100777718 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1253 8 28289861 28292479 Vra8g1253 8 28289861 28292479 ECH
Vra3g0732 3 7627600 7629975 Vra8g1253 8 28289861 28292479 PCT