Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0732 ATGCAAGAGGAGCAAGAGATACTTGCAGTTTGTTGTTGGTTGGGTTGGGTCTGCTCATTTTACTTTGGGCAGTTCAATATGACTTTTTCTCTCTTTTCTTGTCTCCTTTTCCTTCTTTCTGTCTTTTCCACCCTTTCTCACTCCCTCACTCCCCATTCCCACCACCACCCTCACTCTGTCACACACAACTACAGAGATGCTCTCACAAAATCCATCCTTTTTTTTGAGGGTCAGAGGTCAGGGAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGGGACTCTGCTCTATCTGATGGCTCCGCCATGAATGTTGATTTGGTTGGAGGGTATTACGATGCTGGGGACAATGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGTGTTATTGAGTTTGGTGGGGTGATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGGCACAGATTATCTTCTTAAAGCTACTGCACATCCAGACACCATTTATGTCCAGGTGGGAGATGCTGAGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGACACCCCAAGAAGTGTTTTTAAAGTAGATAAAAACAACCCTGGTTCGGATGTGGCTGCAGAAACTGCTGCGGCTCTTGCAGCTGCTTCTCTGGCTTTCAAGAAAACTGACCCAGCCTATTCCAAAACTTTGGTTAGGAGGGCTATTCGTGTTTTCCAGTTTGCTGATAAATACAGGGGATCCTACAGCAATGGCTTGAAGTCCGTTGTGTGCCCCTTTTATTGCTCCTACTCTGGTTATCAGGATGAGCTGTTGTGGGGAGCTGCTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAAGCAAATGGACAGACCCTTGGGGCTGCAGATTCTGACAATACCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTGCTTTCCAAGGAATTTCTTGTTCGGAAGGTGCAATCCCTGCATGACTACAAGGGGCATGCAGACAATTTTATCTGTTCTGTTATCCCCGGTTCCTCCTCTTCTCGATTCACCCCAGGTGGACTTCTGTTCAAGATGGGTGATAGCAATATGCAGTACGTGACTTCCACCTCCTTCATACTCTTAGCTTATGCTAAGTATTTAACCAAAGCCCATGTGGTTGTGAACTGCGGTGGAACCACAGTGACCCCAAAAAGACTACGTGCTATAGCCAAAAAACAGGTGGATTATCTGTTAGGAGAGAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCACGGTTTCCGCGAAGGATACACCACAGGGGCTCATCGCTGCCGTCCATTGGTGTTCACCCTGGCAAGATCCAATGCTCGGCAGGGTTCAGTGTGATGAATTCAGAATCACCCAATCCCAACACTCTAGTGGGTGCCGTTGTTGGAGGACCAGATCTGAATGATCGGTTCCCTGATGAACGGTCAGATTACGAGCAATCAGAACCTGCTACTTATATCAACGCACCTCTTGTGGGATCACTTGCTTATCTCGCACACTCTTCTGGCCAACTCTAG 1578 0.4778 MQEEQEILAVCCWLGWVCSFYFGQFNMTFSLFSCLLFLLSVFSTLSHSLTPHSHHHPHSVTHNYRDALTKSILFFEGQRSGKLPSNQRMSWRRDSALSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWGTDYLLKATAHPDTIYVQVGDAEKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLAFKKTDPAYSKTLVRRAIRVFQFADKYRGSYSNGLKSVVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKANGQTLGAADSDNTFGWDNKHVGARILLSKEFLVRKVQSLHDYKGHADNFICSVIPGSSSSRFTPGGLLFKMGDSNMQYVTSTSFILLAYAKYLTKAHVVVNCGGTTVTPKRLRAIAKKQVDYLLGENPLKMSYMVGYGPRFPRRIHHRGSSLPSIGVHPGKIQCSAGFSVMNSESPNPNTLVGAVVGGPDLNDRFPDERSDYEQSEPATYINAPLVGSLAYLAHSSGQL* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0732 525 Gene3D - 60 522 IPR012341 GO:0005975
Vra3g0732 525 PANTHER ENDO-1,4-BETA-GLUCANASE 28 525 - -
Vra3g0732 525 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 491 509 IPR033126 -
Vra3g0732 525 PANTHER ENDOGLUCANASE 17 28 525 - -
Vra3g0732 525 SUPERFAMILY Six-hairpin glycosidases 62 522 IPR008928 GO:0005975
Vra3g0732 525 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 418 444 IPR018221 -
Vra3g0732 525 Pfam Glycosyl hydrolase family 9 64 514 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0732 Vra-Chr3 7627600 7629975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0732 33 521 Glycoside Hydrolase AT1G02800 76.316 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0732 K01179 - gmx:100793900 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0732 3 7627600 7629975 Vra3g0732 3 7627600 7629975 ECH
Vra3g0732 3 7627600 7629975 Vra8g1253 8 28289861 28292479 PCT