Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1244 ATGTCTTTCAGCGCCCTCCTCCTCCTTCTCCTCTTCTCCCCGACCATCGGCGCCATCACCGACGCACCAACAGCCTACGAAATGCTGGAAAGATTTCACTTTCCGGAGGGCCTTCTTCCGAAAGGAGTGACCGGCTACGAACTGGACCCGTCCAGCGGTAAATTCCGCGCCGATCTGAACAGTTCGTGCAGTTTCTCCCTCGAAGGTTCGTACCAGTTGAATTACCAGAAAACCATCACAGGCTACATATCCGACGGCAGGCTAACAGAACTGCACGGGATAAGTGTGAAGGTCCTCTTCTTCTGGCTCAACATTCTCAATGTTGTTCGCGTCGGCGATGACATCGATTTCTCCGTCGGTGTCGCTTCCGCTTCATTTTCTCTTGATAACTTCTTCGTCTCCCCGCAGTGCGGTTGCGGCTTGGATTGCGGTGATCTTCGAATAAGGAAACTGAAATTGGGAAAAGAAAACCCTTCGCTTTCCACTGTGTAG 492 0.5203 MSFSALLLLLLFSPTIGAITDAPTAYEMLERFHFPEGLLPKGVTGYELDPSSGKFRADLNSSCSFSLEGSYQLNYQKTITGYISDGRLTELHGISVKVLFFWLNILNVVRVGDDIDFSVGVASASFSLDNFFVSPQCGCGLDCGDLRIRKLKLGKENPSLSTV* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1244 163 PANTHER T31J12.3 PROTEIN-RELATED 5 162 IPR007493 -
Vra8g1244 163 Pfam Protein of unknown function, DUF538 25 131 IPR007493 -
Vra8g1244 163 Gene3D - 16 138 IPR036758 -
Vra8g1244 163 SUPERFAMILY At5g01610-like 4 143 IPR036758 -
Vra8g1244 163 PANTHER F22D16.19 PROTEIN 5 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1244 Vra-Chr8 28141412 28142150 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1244 - - pvu:PHAVU_007G218600g 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1244 8 28141412 28142150 Vra8g1244 8 28141412 28142150 ECH
Vra8g1244 8 28141412 28142150 Vra3g0719 3 7546297 7547137 ECH