Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1231 ATGCTGCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGAGAGACTTATAACGGCCATTTGGTAAATTGTGATACATGGATGAACATCCATCTCAGAGAAGTCATTTGTACATCTAAAGATGGAGATAGGTTTTGGCGTATGCCTGAGTGCTACATTCGTGGTAATACCATTAAGTACCTTCGGGTTCCTGATGAGGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTGCCGATCGCAAACCCCCTGGTGTGGGACGTGGAAGGGGAAGAGGTAGGGATGATGGTCCTGGAGGACGGCAAACAAAAGGAATCGGGCGTGGCCTTGAAGATGGTGGACCAAAAGGACAAGGAGGAGGTCGAGGCAGGGGTGGTCCAGGTGGAAAGCCAGGTGGAATCAGAGGGCGAGGTAGAGGTTAA 447 0.5011 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGRDDGPGGRQTKGIGRGLEDGGPKGQGGGRGRGGPGGKPGGIRGRGRG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1231 148 MobiDBLite consensus disorder prediction 79 109 - -
Vra8g1231 148 Gene3D - 1 83 - -
Vra8g1231 148 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Vra8g1231 148 Pfam LSM domain 6 70 IPR001163 -
Vra8g1231 148 MobiDBLite consensus disorder prediction 79 148 - -
Vra8g1231 148 SUPERFAMILY Sm-like ribonucleoproteins 3 128 IPR010920 -
Vra8g1231 148 SMART Sm3 5 71 IPR001163 -
Vra8g1231 148 PANTHER SM-LIKE PROTEIN LSM4 1 137 - -
Vra8g1231 148 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 137 IPR027141 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1231 Vra-Chr8 27927411 27929620 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1231 K12623 - pvy:116139016 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1231 8 27927411 27929620 Vra3g0704 3 7417071 7425650 PCT