Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0704 ATGCTTCCTCTCTCCCTTCTCAAAACTGCCCAAGGCCACCCAATGTTGGTAGAACTGAAAAATGGAGAGACTTATAACGGCCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGCACGTCTAAAGATGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAACACAATCAAGTACCTTCGTGTTCCCGATGAGATCGTAAACCGCCTGGTGTGGGGCGTGGAAGGGGAAGAGGCAGAGAAGAAGGTGCTGGTGGACGCCAACCAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTACCAAGGGAGCTGGAGGAGGTCGAGGCAAGGGTGGCCCTAGCGGAAAGCCTGGTGGAAACAGAGGGCGAGGTAGAGGCTGATTCTGACTGGTGGTTTGAACTACTTCAGATGGACCAGTTGCAACTTCAATGCCCGTGTTTCCTTGTGCATCCTTGA 483 0.5052 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEIVNRLVWGVEGEEAEKKVLVDANQKELGVVLMMVVPRELEEVEARVALAESLVETEGEVEADSDWWFELLQMDQLQLQCPCFLVHP* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0704 160 Pfam LSM domain 6 70 IPR001163 -
Vra3g0704 160 PANTHER SM-LIKE PROTEIN LSM4 1 79 - -
Vra3g0704 160 SUPERFAMILY Sm-like ribonucleoproteins 3 78 IPR010920 -
Vra3g0704 160 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Vra3g0704 160 Gene3D - 1 80 - -
Vra3g0704 160 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 79 IPR027141 GO:0006396
Vra3g0704 160 SMART Sm3 5 71 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0704 Vra-Chr3 7417071 7425650 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0704 K12623 - csv:101203991 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0704 3 7417071 7425650 Vra3g0704 3 7417071 7425650 ECH
Vra8g1231 8 27927411 27929620 Vra3g0704 3 7417071 7425650 PCT