Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1206 ATGGGGGTTGTCACTATTGGAGAATTAAAGCCTAGCATCTCTGGGAAGAGGACCTTTCGTCCTAGTTCCAGCATAAGGCATGCCACTGAATGGCCGATATCTGATGTCTCTAGTGATCTCACCATCGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGGATTCGGAAAATGCTATTAGAAGCAAAAGATTCAAAAGTTTCACGGATAAGTCTCCCAAACGTGCCGGGTGGTGCAGAGGCATTTGAGCTGGCTGCCAAATTCTGTTATGGAATCAATGTTGAGTTCAGCCTCTCCAATGTTGCCATGCTAAAATGTGTTGCTCATTTTCTTGAAATGACAGAAGAGTTCTCAGAGAAAAACCTGGAGACACGAGCCGAAGCATACCTAAAGGAAACGGTGCTACCAAATATATCAAACACAATATCTGTTCTTCACCGTTGTGAAACTCTTGTCCCCACTTCAGAAGAGATTAGTCTTGTCAGCAGACTAATCAATGCAATTGCAAATAATGCATGTAAAGAACAGCTCACCACTGGTTTACAAAAGCTGGACCATAACTTCCCTTCTAAAACCATCACAAACATGGAACCCGAAACACCCTCAGAATGGTGGGGAAAATCTCTCAATGTTCTTAGTCTTGATTTCTTCCAAAGAGTTTTGTCTGCAGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCACATAATTCTCTTCAAGGGATTGTTAGGGACCACCATGCAGTGAAAGGATGTTTTCCCGACTTAGAATTGCAGAAGAAACAAAGAGTCATTGTTGAAGCCATTTCTGGCTTACTACCAACACAATCAAGGAAAAGCCCGGTTCCAATGGCATTTCTCTCAAGCTTGTTGAAAGCTGCAATAGCTGCATCGGCATCCACTTCTTGCAGATCTGACTTGGAGAGAAGAATTGGTCTACAGCTTGAACAGGCAATTCTGGAAGACATCCTAATCCCAACAAATTCACATCAAAATACCCATGGCACCATTTATGACACTGATTCAATTTTGAGAATTTTTTCCAATTTTCTGAACTTGGATGAGGAGGACGAAGAGGATCATAATCACTTGAGAGATGAAAGTGAGATGGTTTATGACTATGACAGCCCCGGATCTCCAAAACAAAGCTCAATTCTGAAGGTATCAAAATTGATGGACAACTATCTTGCCGAAGTCGCACTAGACCCAAACTTGTTGCCATCAAAGTTCATCTCCCTTGCTGAACTACTTCCAGATCACGCACGTATTGTGAGTGATGGACTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATAAAGGATTCAGAGAGATACCGGCTGTGCAAAACCATTGATTGTCAGAAACTGTCTCAAGAAGCGTGCAGCCATGCAGCACAAAATGAAAGGCTACCAGTGCAGATGGCAGTGCAGGTTCTATACTTTGAGCAAATAAGGCTTCGCAATGCGATGAACGGAGGGCACAGCCAATATCTCTTTGGAGGACTGAATGGTCAATTCCCTCATCGTTCAGGAAGTGGTGCAGGAAGCGGAGCCATTTCCCCCAGAGACAACTATGCATCAGTGAGAAGGGAGAACCGAGAGCTGAAGCTAGAAGTTGCAAGAATGAGAATGAGGCTGACTGACTTGGAGAAAGATCACGTTAACATGAAGCAGGAGCTAGTCAGATCTCACCCTGCCAATAAGCTATTCAAATCACTCACCAAAAAACTAAGCAAGCTCAATGCTCTATTTCGGATCAACAGTACCAAGCCAAATGCCTCTGAGACTCGCTTCCCTTTCCCAAAGAGAAGGCGTCACTCAGTTTCATGA 1884 0.4315 MGVVTIGELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKMLLEAKDSKVSRISLPNVPGGAEAFELAAKFCYGINVEFSLSNVAMLKCVAHFLEMTEEFSEKNLETRAEAYLKETVLPNISNTISVLHRCETLVPTSEEISLVSRLINAIANNACKEQLTTGLQKLDHNFPSKTITNMEPETPSEWWGKSLNVLSLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGIVRDHHAVKGCFPDLELQKKQRVIVEAISGLLPTQSRKSPVPMAFLSSLLKAAIAASASTSCRSDLERRIGLQLEQAILEDILIPTNSHQNTHGTIYDTDSILRIFSNFLNLDEEDEEDHNHLRDESEMVYDYDSPGSPKQSSILKVSKLMDNYLAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHSQYLFGGLNGQFPHRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVNMKQELVRSHPANKLFKSLTKKLSKLNALFRINSTKPNASETRFPFPKRRRHSVS* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1206 627 Pfam BTB/POZ domain 37 140 IPR000210 GO:0005515
Vra8g1206 627 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Vra8g1206 627 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 620 - -
Vra8g1206 627 PANTHER OS12G0117600 PROTEIN 25 620 IPR043454 -
Vra8g1206 627 Gene3D Potassium Channel Kv1.1; Chain A 24 144 IPR011333 -
Vra8g1206 627 Coils Coil 543 577 - -
Vra8g1206 627 Pfam NPH3 family 211 479 IPR027356 -
Vra8g1206 627 SMART BTB_4 38 130 IPR000210 GO:0005515
Vra8g1206 627 ProSiteProfiles NPH3 domain profile. 211 503 IPR027356 -
Vra8g1206 627 SUPERFAMILY POZ domain 22 123 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1206 Vra-Chr8 27398491 27402767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1206 1 453 EF-hand Containing Proteins AT2G47860 59.504 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1206 - - gmx:100814622 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1206 8 27398491 27402767 Vra8g1206 8 27398491 27402767 ECH
Vra3g0678 3 7246574 7250380 Vra8g1206 8 27398491 27402767 PCT