Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0678 ATGGGAGTGGTAACTGTTGCCGAATTGAAGCCTAGCATTTCAGGAAAAAGGACCTTTCGTCCAAGCTCAAGCATAAGACATGCCACCGAATGGCCAATATCTGACGTTTCTAGTGATCTCACAATCGAAGTAGGAGCATCAGCCTTCGCACTTCACAAGTTTCCTCTTGTTTCTCGGAGTGGAAGAATTCGGAAGCTGCTGTTAGAAGCAAAAGATTTGAAAGTTTTACGCATAAGTCTCCCAAATGTGCCAGGTGGAGCAGAGGCATTTGAGCTAGCTGCCAAATTTTGCTATGGGATCAATGTTGAGTTCACTCTCTCAAATATTGCCTTGCTACGGTGCACGGCTCATTTTCTTGAAATGACAGAAGAATTTTCTGAGAAAAACTTAGAATCCAGAGTTGAAGCATACCTTAGGGACACAGTGCTACCTAACATATCAAGCACAGTGTATGTTCTTCACAGTTGTGAGGCCCTCCTTCCAATGTCAGAGGAAATAAACCTAGTCAACAAGCTAATCAATGCAATTGCAAACAACGCGTGCAAAGAGCAGCTTACATCTGGTTTACTAAAACTCGATCACAATTTCCCTTCTAAAACCACACCAACCATGGAGCCAGAAACACCCGCAGATTGGTGGGGGAAGTCTTTCAATGTTCTTAGTCTTGAGTTCTTCCAACGAGTTGTATCTGTTGTGAAGTCAAAGGGACTGAAACAAGACATGATCAGCAAGATATTGATGAACTATGCACATGGTTCACTTCAGGGGATTGGTGTTAGAGATCCCCAAGTGGTGAAAGGAAGTCTTCATGACATGGAATTGCAAAAGAAACAAAGGGTCGTTGTTGAAACCATAGTTGGCTTACTCCCAACTCACTCAAGGAAAAGCCCTGTTCCAATGGGATTCCTCTCAAGTTTGTTGAAAGCTGCAATAGCAGCACCTGCATCAACTCATTGCAAATCTGATTTGGAGAGGCGAATTAGTCTTCAACTAGACCAGGCAATTCTCGAAGACATCTTAATCCCAACAAACTCACCTCAAAACACCCACAATACTATGTATGACACTGACTCAATTCTGAGGATCTTTTCTTTTTATCTAAACATGGACCAAGAGGATGGAGAAGACAGTGATAACTACATTGATGAAAGCCAAATGGTGTATGATTACGACAGCCCTGGATCTCCAAAACAAAGCTCAATTATAAAGGTATCGAAATTGCTGGACAGTTATCTCGCTGAAGTAGCTCTAGACTCAAACTTGTCGCCCTCAAAATTCACAGCACTTGCAGAACTACTTCCAGATCATGCACGTGTTGCAAGTGATGGACTCTATAGAGCAGTTGACATCTTCCTCAAGGTTCATCCAAACATGAAGGACTCAGAGCGATATCGGTTATGCAAAACCATTGATTGTCAGAAACTGTCTCAAGAAGCATGCAGCCATGCAGCACAGAATGAAAGGCTACCGGTGCAGATGGTGGTTCAAGTGCTTTACTTCGAGCAAATGAGGCTTCGCAATGCCATGAATGGAGGGCACAACCAATTCTTCTTCGGTCAGTTTCCTCACCGTTCAGGAAGCGGTGCAGGGAGTGGAGCCATTTCCCCGAGAGATAACTATGCATCAGTGAGAAGAGAGAACAGAGAACTGAAGCTTGAAGTAGCAAGAATGAGAATGAGGCTCACTGACTTGGAAAAAGACCACGTGTCCATGAAGCAGGAGCTTGTTAAGTCTCACCCTGCCAACAAGTTGTTCAAATCATTCACCAGAAAGCTGAGTAAGCTCAATGCTCTGTTCAGGATAAATAGCATTAAGCCAATTGGTGGCAAGGCTTGTTCAGAAAGTCGCTTCCCTTTTCCAAAGCGAAGACGCCACTCTGTTTCATAA 1887 0.4361 MGVVTVAELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASAFALHKFPLVSRSGRIRKLLLEAKDLKVLRISLPNVPGGAEAFELAAKFCYGINVEFTLSNIALLRCTAHFLEMTEEFSEKNLESRVEAYLRDTVLPNISSTVYVLHSCEALLPMSEEINLVNKLINAIANNACKEQLTSGLLKLDHNFPSKTTPTMEPETPADWWGKSFNVLSLEFFQRVVSVVKSKGLKQDMISKILMNYAHGSLQGIGVRDPQVVKGSLHDMELQKKQRVVVETIVGLLPTHSRKSPVPMGFLSSLLKAAIAAPASTHCKSDLERRISLQLDQAILEDILIPTNSPQNTHNTMYDTDSILRIFSFYLNMDQEDGEDSDNYIDESQMVYDYDSPGSPKQSSIIKVSKLLDSYLAEVALDSNLSPSKFTALAELLPDHARVASDGLYRAVDIFLKVHPNMKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMVVQVLYFEQMRLRNAMNGGHNQFFFGQFPHRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTRKLSKLNALFRINSIKPIGGKACSESRFPFPKRRRHSVS* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0678 628 ProSiteProfiles NPH3 domain profile. 211 504 IPR027356 -
Vra3g0678 628 PANTHER OS12G0117600 PROTEIN 25 621 IPR043454 -
Vra3g0678 628 Coils Coil 540 574 - -
Vra3g0678 628 Gene3D Potassium Channel Kv1.1; Chain A 26 142 IPR011333 -
Vra3g0678 628 Pfam NPH3 family 211 480 IPR027356 -
Vra3g0678 628 SUPERFAMILY POZ domain 22 123 IPR011333 -
Vra3g0678 628 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Vra3g0678 628 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0678 Vra-Chr3 7246574 7250380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0678 1 454 EF-hand Containing Proteins AT2G47860 59.794 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0678 - - gmx:100776688 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0678 3 7246574 7250380 Vra3g0678 3 7246574 7250380 ECH
Vra3g0678 3 7246574 7250380 Vra8g1206 8 27398491 27402767 PCT