Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1200 ATGCGGCCCAAACTAGCCTACTCCTTCCCTGAGGAGGTGCTGGAGCACGTGTTCTCCTTTATCGAGTGCGATAAGGACCGTGGCTCGATCTCCCTCGTCTGCAAGTCCTGGTATGAGATCGAGCGCTGGTGCCGCCGGAGAGTCTTTGTCGGAAACTGCTACGCGGTCTCTCCGGCCACCGTCGTCAACCGCTTCCCCAAAGTGAGATCCATCACTATCAAGGGCAAGCCGCACTTCGCGGACTTCAATTTGGTCCCCGAGGGTTGGGGCGCTTATGTAGGCCCTTGGATCAAGGCCATGGCGGCTGCCTACCCCTGGCTTCAGGAGATCAGGCTTAAGAGGATGGTCGTCACCGATGAATGCTTGGAACTTATAGCCAAATCGTTCAAGAACTTCGGAGTGCTGGTGCTCACTTCTTGCGAGGGTTTCACCACTGATGGACTTGCTGCCATTGCCGCCCATTGCAGGAATTTGAGGGAGTTGGAGTTGCGGGAGAGTGAAGTGGAGGACATTTGTGGGCACTGGCTTAGCCATTTTCCCGATTCGTACACATCCTTGGTTTCCCTTAATATTTCTTGCTTAGGAAATGAGGTGAATTTGTCTGCCCTAGAGCGTCTGGTTAGTAGGTGTCCCAATCTGCAGACTCTCCGCCTCAACCGTGCTGTGCCCCTAGATAGGCTGGCCAACCTTCTTCGCGGAGCTCCTCAGTTAGTTGAGTTAGGCACAGGAGCCTACACGAGTGAGATGCGGCCGGAGGTCTTTTCAAACCTAGCTGAAGCATTTGCTGGGTGCAGGCAATTGAAAAGCTTGTCAGGATTCTGGGACGTGCTACCCTCCTACCTTCCAGCTGTTTATCCTATCTGCTCCAACCTGACATCACTGAACATGAGTTATGCAACTATTCAAAGCCCTGATCTTATAAAGCTTGTTAGTCAGTGTGAGAATTTACAACGGTTATGGGTGCTGGATTACATAGAAGATGCTGGCCTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCGTCTGATCCATTTGGGTTAGAACCAAATGTGGCATTGACTGAGCAGGGCCTTGTATCTGTGTCTGAAGGCTGCTCCAAGCTCCAGTCCGTTCTATATTTTTGTCGTCAAATGTCTAATGTGGCCTTGCTTACAATTGCCAGGAACAGGCCTAATATGACTCGTTTTAGACTGTGTATTATTGAGCCGCAAGTTCCAGACTATCTTACCCAAGATCCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCGTCGCCTTTCCCTTTCCGGGCTTCTCACTGACCGCGTTTTTGAGTATATTGGGACTTACGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCCGGAGATAGCGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTAGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGTAAACTTCTGGGTCAGAAAATGCCGATGCTTAATGTTGAAGTGATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGATAACAGTCCTGTTGAGAAGCTATACATATACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGGAAGATGATTCTGCATTAAGAATTTCTTGA 1758 0.4977 MRPKLAYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPATVVNRFPKVRSITIKGKPHFADFNLVPEGWGAYVGPWIKAMAAAYPWLQEIRLKRMVVTDECLELIAKSFKNFGVLVLTSCEGFTTDGLAAIAAHCRNLRELELRESEVEDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANLLRGAPQLVELGTGAYTSEMRPEVFSNLAEAFAGCRQLKSLSGFWDVLPSYLPAVYPICSNLTSLNMSYATIQSPDLIKLVSQCENLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCSKLQSVLYFCRQMSNVALLTIARNRPNMTRFRLCIIEPQVPDYLTQDPLDAGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPMLNVEVIDERGPPDSRPDNSPVEKLYIYRTVSGPRLDMPGYVWRMEDDSALRIS* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1200 585 SUPERFAMILY RNI-like 84 517 - -
Vra8g1200 585 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 6 576 - -
Vra8g1200 585 Gene3D - 1 45 - -
Vra8g1200 585 Gene3D Ribonuclease Inhibitor 46 576 IPR032675 -
Vra8g1200 585 SUPERFAMILY F-box domain 4 43 IPR036047 GO:0005515
Vra8g1200 585 SMART LRR_CC_2 431 454 IPR006553 -
Vra8g1200 585 SMART LRR_CC_2 480 504 IPR006553 -
Vra8g1200 585 SMART LRR_CC_2 371 395 IPR006553 -
Vra8g1200 585 Pfam Transport inhibitor response 1 protein domain 66 112 IPR041101 -
Vra8g1200 585 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 6 576 - -
Vra8g1200 585 Pfam F-box 7 47 IPR041567 -
Vra8g1200 585 SMART fbox_2 9 50 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1200 Vra-Chr8 27280230 27283193 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1200 K14485 - gmx:100809794 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1200 8 27280230 27283193 Vra8g1200 8 27280230 27283193 ECH
Vra3g0667 3 7183662 7187449 Vra8g1200 8 27280230 27283193 PCT