Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0667 ATGCAGAGAATGGCCTACACGTTCTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATTGAGAGCGAGAGGGACCGGAACGCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAATGTTTTCGTGGGTAACTGCTATGCGGTGAGCCCTGTGATGGTGATCAAGCGGTTCCCGGAGTTGAGATCCATTGCGCTCAAGGGGAAGCCGCACTTCGCGGACTTCAACTTGGTCCCCGAGGGTTGGGGCGGTTACGTCTGTCCGTGGATCGCCGCCATGGCCTGCGCCTTCCCCTGTCTCGAAGAGATCAGACTCAAGAGGATGGTCATCACCGACGAGAGCTTGGAACTCATCGCGAAGTCCTTCAAAAACTTCAAGGTGCTGGTTCTCACTTCATGCGAGGGTTTCACCACTGACGGACTGGCCGCCATTGCTGCCAACTGCAGGAATTTGAAGGAGTTGGACTTGCAAGAGAGTGAAGTGGATGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTACACGTCACTAGTGTCACTGAACATCTCTTGCTTAGGCAATGAGGTGAGTTTATCTGCACTGGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCGGACCCTGCGCCTTAATCGTGCTGTGCCCCTTGATAGACTACCCAATCTACTTCGTCGTTGTCCTCAGCTGGTTGAGTTAGGCACCGGAGTTTACTCAACAGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCCGCATTTTCTGAGTGCAAGCAGTTGAAGAGCTTGTCTGGTTTTTGGGACGTCCTCCCATCGTACCTCCCAGCTGTCTACCCCGTCTGCTCCAGGCTAACATCGTTAAACTTGAGTTATGCTATTATTCAGAGCCCTGATCTTATTAAACTTATCAGTCAATGCCCAAATTTGTTGCGTTTGTGGGTTCTGGATTACATAGAAGATGCTGGTCTTTATAACCTTGCTGCATCATGTAAGGATTTAAGGGAATTAAGGGTGTTTCCGTCTGACCCATTCGGTTTAGAACCAAATGTTGCATTGACAGAAAAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCCGGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCTAATGCAGCCCTGCGCACAATTGCGCAGAACAGGCCAAATTTGACTCGTTTTCGGCTTTGTATCATTGAGCCTAGAACGCCCGATTATCTTACGCATGAGCCACTTGATTCTGGTTTTGGAGCCATTGTAGAACATTGCAAGGATCTGCAACGCCTATCTCTGTCTGGTCTTCTTACAGATCGTGTTTTCGAGTATATTGGGACTTACGGGAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGAAAGTGACCTGGGGCTTCATCATGTGCTATCTGGGTGTGATAATCTTAGGAAGCTGGAGATCAGAGACTGCCCCTTTGGTGACAAGGCGCTTTTGGCAAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCAGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCCAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCTAGGCCGGATGATTGTGCTGTTGAGAAGATTTATATTTACAGGACTGTTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCACTAAGGCTTGAGTGA 1761 0.4991 MQRMAYTFSFPEEVLEHVFSFIESERDRNAISLVCKSWYEIERWCRRNVFVGNCYAVSPVMVIKRFPELRSIALKGKPHFADFNLVPEGWGGYVCPWIAAMACAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLKELDLQESEVDDLSGHWLSHFPDSYTSLVSLNISCLGNEVSLSALERLLGRCPNLRTLRLNRAVPLDRLPNLLRRCPQLVELGTGVYSTEMRPEVFSNLEAAFSECKQLKSLSGFWDVLPSYLPAVYPVCSRLTSLNLSYAIIQSPDLIKLISQCPNLLRLWVLDYIEDAGLYNLAASCKDLRELRVFPSDPFGLEPNVALTEKGLVSVSEGCPRLQSVLYFCRQMSNAALRTIAQNRPNLTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDDCAVEKIYIYRTVAGPRLDMPGFVWTMEDDSSLRLE* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0667 586 SUPERFAMILY RNI-like 69 535 - -
Vra3g0667 586 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 8 578 - -
Vra3g0667 586 SMART fbox_2 10 51 IPR001810 GO:0005515
Vra3g0667 586 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 8 578 - -
Vra3g0667 586 SUPERFAMILY F-box domain 6 42 IPR036047 GO:0005515
Vra3g0667 586 Gene3D - 3 46 - -
Vra3g0667 586 Pfam F-box 8 48 IPR041567 -
Vra3g0667 586 SMART LRR_CC_2 432 455 IPR006553 -
Vra3g0667 586 SMART LRR_CC_2 481 505 IPR006553 -
Vra3g0667 586 SMART LRR_CC_2 372 396 IPR006553 -
Vra3g0667 586 SMART LRR_CC_2 314 337 IPR006553 -
Vra3g0667 586 SMART LRR_CC_2 130 155 IPR006553 -
Vra3g0667 586 SMART LRR_CC_2 105 129 IPR006553 -
Vra3g0667 586 Gene3D Ribonuclease Inhibitor 47 577 IPR032675 -
Vra3g0667 586 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0667 Vra-Chr3 7183662 7187449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0667 K14485 - gmx:100779021 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0667 3 7183662 7187449 Vra3g0667 3 7183662 7187449 ECH
Vra3g0667 3 7183662 7187449 Vra8g1200 8 27280230 27283193 PCT