Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1197 ATGATGAAGAATCAACCGTCACAGTGGTGGTGGCTTGAGAGCCACAGTAACACAAGACGATCCCCTTGGCTTCAATCCACTCTCACAGAGCTAAATGAGAAGACAAAGGCAATCTTAAAACTAATTGAAGAAGATGCAGATTCCTTTGCCCAACGTGCTGAGATGTATTACAAGAAGAGACCACAGCTTGTGAGCATGGTTGAAGACTTTTATAGGACACATCGATCATTAGCTGAGCGGTATGATCAAATCGCTGGAATTCGTCAGCAGAAGACTGGAGGATCACCCTTTTCTCCACTCAAGCATCATCAACCAGAGAAGTTGATGAGTTTTGCAAATGACAGTTATGATAGCTGTTCTGAGAGTTGTGATGTGGAGGAGTCTGGGGAATCTGAAATTGATGATCCTGAGCCAGAAGAGGAAGAGGATTCTAAATTCGATAACTGTGCAGAACTGAAGGAAGTTCAGTTTGTGGCTGCAAATGATGTGATGGAAATTGAGAGACTTGGTGAAGAGAACAAGGATCATAAGGATCAGAACAAGCAGAAATATAACATTTACGAAGTAGTGATGTTGAGGGAAGAAATAGAGCAACTCAGAAAAGAGAACAGGGTTCAGAAGGATGAACTCAACCGGAAAAGCATCACTTTTGATGAATTAATGATGCTGAGGGAAGAAATAGAGCAACTAAGAAAAGAGAATAGAGCGCAGAAGGATGAACTCTACCAGAAAGATATCATTTGTGGTGAAGCAATGATGTTGAGGGAAGAAATAGAGCAACTCGGTAAAGAGAATAGAGTTCTGAAGGATGAACTAAGCCAGAAAAGTATCATTTGTGGTGAAGTAATGATATTGAGGGAAGAAATAGAGCAATTTAGAAAAGAGAATAGAGCGCAGAAGCATGAACTCAACCAGAAAGATATCATTTGTGGTGAAGCAATGATGTCGAGGGAAGAAATAGAACAACTCAGTAAAGAGAATACAGTTCTGAAGGATGAACTAAACCAGAAAAATATCATTTGTGATGAAGTTATGATGTTGAGGGAAGAAATAGAACAACTCAGAAAAGAGAATAGAGAGCAGAAGGATGAACTCAACCAGAAAGACAACATTTGCGGTGAAATAATGATGTTGAGGGAAGAAATAGAACAATTGGGAAAAGAGAATGGAGCGCTGAAGGATGAACTCAACAAGAAATATATCATTTGTGGAGAAATAATGATGTTGAGGGAAGAAATAGAACAACTCAGGAAATATAATAGAGGGCAGAGGAATGAACTCGACCAGAAAGGTAACAAGTGTGAAGTAACGATGTTGAGGGAAGAAATTGAAGTATACACAAAAGAGAATAGAGTGAAGAATGATGAACTAAACCCAGAAGATAGCGTTTGTGGTGAAGTAGTGATGTTAAGGAAAGAAATAGAACGACTTGGAAAAGATGAAAGAGCACAAAAAGGTACCCTTTCTGGTGAAGTAATGAAGTTAAGGCAAGAGAATAGCGCGCAGAAGGACCACCTTAAGCAAAAAGACCAAGAGAAAATAGAGGTGATAAGACACCTGAGTTTAGCTATAGATATGCTGAAGCAGGAGAACGTAAAGATGAGAAGCTTCATTGCTAAGGAATCAGCCAACAAATGGAAGAATCCATTTGGGTTTAAGAATTTCATGGGATCATTATCAGAGCAGTTGTTTAATGGAATTACGAAGAATCAACCTAGTATTGTAGCTCTCTAG 1734 0.3916 MMKNQPSQWWWLESHSNTRRSPWLQSTLTELNEKTKAILKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLAERYDQIAGIRQQKTGGSPFSPLKHHQPEKLMSFANDSYDSCSESCDVEESGESEIDDPEPEEEEDSKFDNCAELKEVQFVAANDVMEIERLGEENKDHKDQNKQKYNIYEVVMLREEIEQLRKENRVQKDELNRKSITFDELMMLREEIEQLRKENRAQKDELYQKDIICGEAMMLREEIEQLGKENRVLKDELSQKSIICGEVMILREEIEQFRKENRAQKHELNQKDIICGEAMMSREEIEQLSKENTVLKDELNQKNIICDEVMMLREEIEQLRKENREQKDELNQKDNICGEIMMLREEIEQLGKENGALKDELNKKYIICGEIMMLREEIEQLRKYNRGQRNELDQKGNKCEVTMLREEIEVYTKENRVKNDELNPEDSVCGEVVMLRKEIERLGKDERAQKGTLSGEVMKLRQENSAQKDHLKQKDQEKIEVIRHLSLAIDMLKQENVKMRSFIAKESANKWKNPFGFKNFMGSLSEQLFNGITKNQPSIVAL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1197 577 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 7 88 IPR011684 GO:0003779
Vra8g1197 577 Coils Coil 313 395 - -
Vra8g1197 577 MobiDBLite consensus disorder prediction 118 145 - -
Vra8g1197 577 PANTHER PROTEIN NETWORKED 4A 413 577 - -
Vra8g1197 577 PANTHER PROTEIN NETWORKED 4A 252 335 - -
Vra8g1197 577 PANTHER PROTEIN NETWORKED 4A 7 274 - -
Vra8g1197 577 Coils Coil 189 244 - -
Vra8g1197 577 Coils Coil 492 512 - -
Vra8g1197 577 Coils Coil 251 271 - -
Vra8g1197 577 Pfam KIP1-like protein 9 82 IPR011684 GO:0003779
Vra8g1197 577 PANTHER PROTEIN NETWORKED 3A-RELATED 413 577 - -
Vra8g1197 577 PANTHER PROTEIN NETWORKED 3A-RELATED 252 335 - -
Vra8g1197 577 PANTHER PROTEIN NETWORKED 3A-RELATED 7 274 - -
Vra8g1197 577 Coils Coil 406 426 - -
Vra8g1197 577 MobiDBLite consensus disorder prediction 120 145 - -
Vra8g1197 577 Coils Coil 282 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1197 Vra-Chr8 27194382 27198277 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1197 - - pvu:PHAVU_007G166300g 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1197 8 27194382 27198277 Vra8g1197 8 27194382 27198277 ECH
Vra3g0665 3 7166225 7169092 Vra8g1197 8 27194382 27198277 PCT