Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1178 ATGATTTCTCCAAGGCAAGATCCTCTTTTTTCACAGGCCGGCTTCTCCACCATGCTCAAGCTCCTCAACAAGAACATCCGCCGCCTCCTCCGCCGTCTCCGGTGGCCAATTCGCCGCCGCTCGAAGCCCAAAGTAGTAGTGATCAGCAAGCTCGGAAAGAACGCCCCGAAGGCCCAAACTGAGCCAAGCCCAAACCTTTCCGCGACCGTTCATCCTAACGCGCAATTGGGTACTCCGAAGCCAATCCGGATCGCGACGTTCAACGCCGCGCTGTTCTCCATGGCCCCGGCGCTCCCGAAAGCTGCACGAGAGTTGGGGGAGCAAAAGGGCGTCGCTTCAAAGGCGAATTCGCGGCCCAGAAGCATATTGAAGCATTCGCCATCGCAGTCGCAATCAGTGAAGAACAGAGCAGAGGAGAACGTTGGTAGCAGACAGAAGATGAGGGTTTCCATAAATTTACCAGACAACGAGATTTCGCTGTTGCGAAGCCGACAATCGAGCTTCTCGGAACACGACAAGGAGGGGCTGAAGGCGTGGTCGGTAGGGGGAGGTGGGGCCCACATGAGTAACAGAACGGTTGTTGAGGTTCTGAAGGAAGTGGACGCAGATGTTTTGGGTCTGCAAGATGTGAAGGCTGAGGAAGAAAATGGGATGAAGCCTTTGTCTGATTTGGCTGCGGCGCTGGGAATGAACTACGTCTTCGCCGAAAGCTGGGCACCTGAGTACGGCAATGCTGTCTTGTCCAAATGGCCCATCAAACGCTGCGTCTCTCACCAAATCTTCGATCACACTGATTTCAGGAATGTTTTGAAGGCAACAATCGATGTGCCTCAAGTAGGTGAGCTTAACTTCTACTGTACACATCTTGATCATCTTGATGAGAATTGGCGAATGAAGCAGGTAAATGCAATAATTCAATCCAGTGATGAGCCTCACATCTTAGCTGGAGGCCTTAATTCACTGGATGAATCAGATTACTCCCAAGAAAGATGGACAGATATTGTGAAGTACTATGAAGAGATGGGAAAGCCAACACCAAAGGTTGAAGTGATGAAACATCTCAAGAGTAAAGACTACACTGATGCAAAGGATTATGCAGGGGAATGCGAGTCTGTTGTCATGATTGCCAAGGGCCAAAGTGTTCAAGGAACATGTAAGTATGGAACTAGGGTAGATTACATATTATCATCATCAAATTGTCCATACAAGTTTGTTCCTGGTTCCTATTTAGTCCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTGAAAGTTGATGTGGTGAAGGCAAATGACAACCCTGAAGAAAAGGTGCCAAAGAATACGCAACAACCAAGACAGAGAGTTGTAAAAATAACACAATCCACACCCTCAAAAGGTATCTGGAAAACTCACACTTGA 1401 0.4854 MISPRQDPLFSQAGFSTMLKLLNKNIRRLLRRLRWPIRRRSKPKVVVISKLGKNAPKAQTEPSPNLSATVHPNAQLGTPKPIRIATFNAALFSMAPALPKAARELGEQKGVASKANSRPRSILKHSPSQSQSVKNRAEENVGSRQKMRVSINLPDNEISLLRSRQSSFSEHDKEGLKAWSVGGGGAHMSNRTVVEVLKEVDADVLGLQDVKAEEENGMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRCVSHQIFDHTDFRNVLKATIDVPQVGELNFYCTHLDHLDENWRMKQVNAIIQSSDEPHILAGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKHLKSKDYTDAKDYAGECESVVMIAKGQSVQGTCKYGTRVDYILSSSNCPYKFVPGSYLVLSSKGTSDHHIVKVDVVKANDNPEEKVPKNTQQPRQRVVKITQSTPSKGIWKTHT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1178 466 MobiDBLite consensus disorder prediction 119 138 - -
Vra8g1178 466 Gene3D Endonuclease/exonuclease/phosphatase 178 430 IPR036691 -
Vra8g1178 466 Pfam Endonuclease/Exonuclease/phosphatase family 181 420 IPR005135 GO:0003824
Vra8g1178 466 SUPERFAMILY DNase I-like 179 427 IPR036691 -
Vra8g1178 466 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE, PGAP2-INTERACTING PROTEIN-RELATED 185 465 - -
Vra8g1178 466 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE, PGAP2-INTERACTING PROTEIN-RELATED 12 172 - -
Vra8g1178 466 MobiDBLite consensus disorder prediction 56 74 - -
Vra8g1178 466 MobiDBLite consensus disorder prediction 106 145 - -
Vra8g1178 466 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 185 465 - -
Vra8g1178 466 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 12 172 - -
Vra8g1178 466 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1178 Vra-Chr8 26895643 26899511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1178 - - gsj:114390420 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1178 8 26895643 26899511 Vra8g1178 8 26895643 26899511 ECH
Vra3g0072 3 789589 792023 Vra8g1178 8 26895643 26899511 PCT