Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0072 ATGCTTAAGCTCCTCAACAAGAACCTCCGGCGCCTCAGCTCCCTTCTGAAGTGGTCACTACGGCGTCGTTCCAAGTCCAACCCTAGCTTCGGCAACCCCACTCCCAAACCTCACACCGAACCAAGAACCAGCACCCCCGAACCTTCCCCTCCTCCTTCCAGACCAATACGAATCGCTACGTTCAACGCCGCATTCTTCTCTATGGCACCGGTGCTTCCCGAACCAGACAGAAGCACCACCTCGGACGACGACAACGTGGAGCAACCAAAGTCAACCTACGACCGACCACCACGAAGCATTTTGAAACAGTCGCAGTCTCCGCTGTTGGGTAAGTCAAAGCTAAGAGTGTCGATCAACTTACCCGACAACGAGATTTCGCTGCGGCAAACGAGCTTCTCGGAGCACGAGAGAGCAAAAGGGCCGTTCTCATGGTCGTCGAGTTTCAGCGAGGGAGTGGAGGGAGAGAGAAACAGGAAAACGGTGCTTGAAGTTCTGAGAGAGGTAAACGCCGACGTTTTGGGGTTGCAAGACGTGAAGGCGGAGGAAGAGAACGGGATGAAGCCTTTATCTGATTTGGCTCGAGCTTTGGGGATGAACTACGTCTTCGCCGAAAGCTGGGCCCCTCAATACGGCAACGCCGTTCTGTCAAAGTGGCCCATTAAACGCTGGAAGCTGCAGAAAATCTTCGACCACACCGATTTCAGGAATGTACTGAAGGCCACTATCGATGTACCCGAAGAAGGTGAACTGTACTTTTACTGCACCCACCTTGATCATCTTGATGAGAATTGGAGAATGAAGCAGATAAATGCAATAATTCAATCTAATGATGAGCCACACATTTTAGCTGGTGGTCTTAATTCGCTTGATGAATCAGATTATTCCCAAGAAAGATGGACAGATATTGTTAAGTACTATGAGGAGATGGGAAAGCCAACACCCAAGGTTGAAGTCATGAAATATCTCAAGAACAGACACTACACAGATGCGAAGGACTTTTCAGGGGAATATGAGTCTGTTGTCATGATCGCCAAAGGACAAAGTGTCCAAGGTACGTGCAAGTATGGAACTCGGGTAGATTACATATTATCATCCTCAGATTCTCCATACCAATTTGTTTCAGGGTCTTACTTAGTCCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTGAAAGTTGATGTGGTAAAAGTGAATAGAAATCCTCAAGAAAATCTGACAAAGAAGCAGGAACAGCCACGACACAAACTTCAGAGAATAAAATCAACTTCATCCAAATGTATATGGAAAACACAAACTGCAGATATAGATTGA 1314 0.4718 MLKLLNKNLRRLSSLLKWSLRRRSKSNPSFGNPTPKPHTEPRTSTPEPSPPPSRPIRIATFNAAFFSMAPVLPEPDRSTTSDDDNVEQPKSTYDRPPRSILKQSQSPLLGKSKLRVSINLPDNEISLRQTSFSEHERAKGPFSWSSSFSEGVEGERNRKTVLEVLREVNADVLGLQDVKAEEENGMKPLSDLARALGMNYVFAESWAPQYGNAVLSKWPIKRWKLQKIFDHTDFRNVLKATIDVPEEGELYFYCTHLDHLDENWRMKQINAIIQSNDEPHILAGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKYLKNRHYTDAKDFSGEYESVVMIAKGQSVQGTCKYGTRVDYILSSSDSPYQFVSGSYLVLSSKGTSDHHIVKVDVVKVNRNPQENLTKKQEQPRHKLQRIKSTSSKCIWKTQTADID* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0072 437 Pfam Endonuclease/Exonuclease/phosphatase family 158 388 IPR005135 GO:0003824
Vra3g0072 437 MobiDBLite consensus disorder prediction 77 91 - -
Vra3g0072 437 MobiDBLite consensus disorder prediction 71 106 - -
Vra3g0072 437 MobiDBLite consensus disorder prediction 23 38 - -
Vra3g0072 437 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE, PGAP2-INTERACTING PROTEIN-RELATED 2 432 - -
Vra3g0072 437 MobiDBLite consensus disorder prediction 39 55 - -
Vra3g0072 437 SUPERFAMILY DNase I-like 53 395 IPR036691 -
Vra3g0072 437 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 2 432 - -
Vra3g0072 437 MobiDBLite consensus disorder prediction 23 56 - -
Vra3g0072 437 Gene3D Endonuclease/exonuclease/phosphatase 143 397 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0072 Vra-Chr3 789589 792023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0072 - - vra:106757483 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0072 3 789589 792023 Vra3g0072 3 789589 792023 ECH
Vra3g0072 3 789589 792023 Vra8g1178 8 26895643 26899511 PCT