Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1170 ATGGCGGCAGGCCCAACCTCACCCTCCGATCGACCCACCATGGCTCCTCCCCCAATGCTCATCTCCGACTCAGTCGCCAAGGACGCCATACTCGCTTGGTTTCGAGGCGAGTTCGCTGCAGCCAACGCCATCATCGACGCCCTCTGCGCTCACCTGGCCACCTCTGCCCACGACTATGATGCCGTCTTCGCAGCCATCCACAACCGTAGGCTCAACTGGATCCCCGTCCTCCAGATGCAGAAGTACCACTCCATTGCGGACATCACCCTTGAACTCCGTAGAATTTCCGACAGAAACCCCAGCGTTGATGACAAATCCAAATCTGACGAAAAAAAGACGTCGTCGGAGAGTGTAGTCGGAAATGGTGCGGCTGATGAACACGAGGAGTATGAATCTCCTGAGAGTGAGATTACTGATTCAGGATCTCAAGAAATGCAGGCTAGTCCCATGAACGTTAATTTATGTTCCAATCATGAACATTGTGAAGGACGTTCTTCACAGTTTAAGTTGACCAAAGGTTTCTCTGCAAAAGAGTCAGTCAAGGGACATATGGTGAATGTAGTAAAAGGATTGAAGTTATATGAAGACATTTTCACAGATTTAGAACTATGCAAGCTGACAGACTTCGTGAATGAGATTCATGCTGCTGGCCAGAATGGGGAACTATGTGGTGAAACTTTTATATTATTCAACAAGCAGATGAAGGGAAACAAGCGAGAGCTGATTCAGCTGGGTGTTCCAATATTTGGACAGATAAAGGAGGACGTAAAAAGCAATATAGAGCCAATTCCTCCACTTCTCCAAGGTGTCATTGATCACCTGATTCAGTGGCAGTTACTTCCCGAGTACAAAAGACCAAATGGTTGTATTATCAACTTTTTTGAGGAGGGGGAGTTTTCTCAACCATTCCTCAAACCACCGCATCTGGATCAACCTGTGTCCACTCTTCTTCTTTCTGAATCGACAATGGCTTTCGGACGTGTACTTATGAGTGAAAATGATGGAAACTACAAAGGACCTCTCATGCTCTCATTGAAGCAGGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGACATGGCAAGGCATGTAATGTGTCCATCTCCTAACAGAAGGGTTAGCATCACCTTCTTCAGAGTGAGGCCAGATTCCAATCAGTGCCAGTCACCAACTCCTGCTATGACAAATGCGATGACTCTGTGGCAACCAGGCATTGCTAGTCCATATGCTTTGCCAAATGGTGCTCTAAGTGGCTATGAGGGTATGGACATGATGCCAAAATGGGGAATGCTTCACGGTCCAATGGTGATGCTAACTCCTATGCGTCCTGTGGCATTGACTTCTCGCAAACTTGCTGGTGGTGGAACTGGGGTGTTTTTGCCATGGAATGTGCCATCTAGAAAACCTGCCAGGCATCTTCCCCCACGTGCCCAAAAAGGGAGGCTTCTCACATTACCTTCACCTGTTGAACCCCAGATGGGAGAATCCACTTCAGAACCAAGCAGCATCTGTGTTGAAGGATAA 1524 0.4764 MAAGPTSPSDRPTMAPPPMLISDSVAKDAILAWFRGEFAAANAIIDALCAHLATSAHDYDAVFAAIHNRRLNWIPVLQMQKYHSIADITLELRRISDRNPSVDDKSKSDEKKTSSESVVGNGAADEHEEYESPESEITDSGSQEMQASPMNVNLCSNHEHCEGRSSQFKLTKGFSAKESVKGHMVNVVKGLKLYEDIFTDLELCKLTDFVNEIHAAGQNGELCGETFILFNKQMKGNKRELIQLGVPIFGQIKEDVKSNIEPIPPLLQGVIDHLIQWQLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVSTLLLSESTMAFGRVLMSENDGNYKGPLMLSLKQGSLLVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPTPAMTNAMTLWQPGIASPYALPNGALSGYEGMDMMPKWGMLHGPMVMLTPMRPVALTSRKLAGGGTGVFLPWNVPSRKPARHLPPRAQKGRLLTLPSPVEPQMGESTSEPSSICVEG* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1170 507 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 285 382 IPR005123 -
Vra8g1170 507 MobiDBLite consensus disorder prediction 490 507 - -
Vra8g1170 507 Gene3D - 174 389 IPR037151 -
Vra8g1170 507 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 10 500 IPR044842 GO:0003729|GO:0006402|GO:0032451
Vra8g1170 507 MobiDBLite consensus disorder prediction 98 114 - -
Vra8g1170 507 MobiDBLite consensus disorder prediction 98 146 - -
Vra8g1170 507 SUPERFAMILY Clavaminate synthase-like 184 381 - -
Vra8g1170 507 MobiDBLite consensus disorder prediction 466 507 - -
Vra8g1170 507 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 10 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1170 Vra-Chr8 26750738 26756135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1170 K10767 - gmx:100791586 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1170 8 26750738 26756135 Vra8g1170 8 26750738 26756135 ECH
Vra3g0076 3 805339 811809 Vra8g1170 8 26750738 26756135 PCT