Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0076 ATGGCGGCTGTCCCAGTATCGCGGACCGATCCACCGGCAATGGTGCCGCCACCTCTCATCATTTCTGACTACTTTGCCAAGGACGCCATTCTTGCCTGGTTTCGTGGCGAGTTCGCTGCAGCCAACGCCATCATCGACGCGCTCTGTGGCCACCTCGCCAGCATCGCTTCCGCCTCCTCCGACTACGAAGCCACCTTCACAGCCATCCACAACCGTCGAGTCAACTGGATCCCTATCATCCAGATGCAGAAGTACCACTCCATCGCTGATGTCGCTCTCGAGCTCCGCAAAGTAACGGACAGAAAAATGGAGGCCGAAGGCCTCAGAAAGAGCGACAACAGCTTAGACCAGGAACAGAAATTGGAGAAGGAAAACGAGGAAACTGTTGGAAATGAAGGTGACGAAGCTGCTACGCCGGAGTATGATTCGCCAGACAGTGAAATAACTGATTCAGGATCTCAGGAAATGCAATCCAATGCACTGAACAATAATATATGTTCCAATCATGAAGAATGTGAAGGACGCTCTTCACAGATAAAGCTGACAAAAGGTTTCTCAGCAAAGGAGTCCGTGAAGGGGCATATGGTGAATGTTGTGAAAGGATTGAAGTTGTACGAGGATGTGTTTTCTGAATCAGAAATCTGCAAGCTGACTGATTTTGTGAATGATATTCATGCTGCTGGCCAGAACGGGGAACTCTCAGGTGAAACCTTTATACTATTCAACAAACAAATGAAGGGAAATAAGAGAGAGCTGATTCAGTTGGGTGTTCCGATATTTGGACAGATAAAGGATGATACCAAAAGCAATATCGAGCCTATCCCAGCACTTCTCCATGATGTCATTGATCACCTTATTCAATGGAAATTAATTCCAGAGTACAAAAGGCCAAATGGTTGTATCATCAACTTTTTTGAAGAGGGGGAATTTTCTCAACCATTCCTGAAACCACCCCATTTGGACCAACCTCTATCCACACTTCTTCTCTCTGAATCAACAATGGCTTTTGGGCGTATCCTTGTCAGTGAAAATGATGGGAACTACAAAGGACCACTCATGCTCTCATTGAAGGAGGGGTCTCTTATAGTGATGAGGGGAAACAGTGCAGACATGGCAAGACATGTAATGTGTCCATCCCCCAACAGAAGGGTGAGCATCAGCTTCTTTAGAGTGAGGCCAGATTCCAATCAATGCCTATCACCAGTTCCTACCATGACAACTGCAATGAGTCTTTGGCAACCTGGCATTACTAGCCCATATACTTTGTCAAATGGAGGTCTAAGCGGCTATGAAGCAATGGATATGACGCCTAACTGGGGAATATTTGGTGCTCCAATTGTTATGCTACCACCTATGCGTCCTGTGGCAGTGAACTCTCGCAAAGTTCCTCGAGGTGGGACTGGGGTTTTCTTGCCTTGGAAGGGAACATCGAGAAAACACACAAGGCATCTGCCACCTCGTGCCCAAAAAGGACGACTTATGGAATTACCCTCTCCAGTTGAATCACAGTTGGGAGAGTCTACCTCTGAACCCAGCATAGCTGCTGAAGGGGTAGGCATGAGTTGA 1566 0.4725 MAAVPVSRTDPPAMVPPPLIISDYFAKDAILAWFRGEFAAANAIIDALCGHLASIASASSDYEATFTAIHNRRVNWIPIIQMQKYHSIADVALELRKVTDRKMEAEGLRKSDNSLDQEQKLEKENEETVGNEGDEAATPEYDSPDSEITDSGSQEMQSNALNNNICSNHEECEGRSSQIKLTKGFSAKESVKGHMVNVVKGLKLYEDVFSESEICKLTDFVNDIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKDDTKSNIEPIPALLHDVIDHLIQWKLIPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILVSENDGNYKGPLMLSLKEGSLIVMRGNSADMARHVMCPSPNRRVSISFFRVRPDSNQCLSPVPTMTTAMSLWQPGITSPYTLSNGGLSGYEAMDMTPNWGIFGAPIVMLPPMRPVAVNSRKVPRGGTGVFLPWKGTSRKHTRHLPPRAQKGRLMELPSPVESQLGESTSEPSIAAEGVGMS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0076 521 SUPERFAMILY Clavaminate synthase-like 192 391 - -
Vra3g0076 521 MobiDBLite consensus disorder prediction 468 521 - -
Vra3g0076 521 Gene3D - 185 398 IPR037151 -
Vra3g0076 521 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 3 515 IPR044842 GO:0003729|GO:0006402|GO:0032451
Vra3g0076 521 MobiDBLite consensus disorder prediction 105 127 - -
Vra3g0076 521 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 3 515 - -
Vra3g0076 521 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 296 393 IPR005123 -
Vra3g0076 521 MobiDBLite consensus disorder prediction 105 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0076 Vra-Chr3 805339 811809 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0076 K10767 - gmx:100796344 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0076 3 805339 811809 Vra3g0076 3 805339 811809 ECH
Vra3g0076 3 805339 811809 Vra8g1170 8 26750738 26756135 PCT